Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GR129_RS11480 Genome accession   NZ_CP047144
Coordinates   2625345..2626460 (-) Length   371 a.a.
NCBI ID   WP_236576274.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2620345..2631460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS11470 (GR129_11470) rcrP 2621621..2623354 (+) 1734 WP_159701162.1 ABC transporter ATP-binding protein Regulator
  GR129_RS11475 (GR129_11475) rcrQ 2623354..2625282 (+) 1929 WP_145488335.1 ABC transporter ATP-binding protein Regulator
  GR129_RS11480 (GR129_11480) rpoS 2625345..2626460 (-) 1116 WP_236576274.1 RNA polymerase sigma factor Regulator
  GR129_RS11485 (GR129_11485) dnaG 2626565..2628472 (-) 1908 WP_159701165.1 DNA primase -
  GR129_RS11490 (GR129_11490) - 2628519..2629784 (-) 1266 WP_159701168.1 FAD-dependent oxidoreductase -
  GR129_RS11495 (GR129_11495) - 2629889..2631178 (-) 1290 WP_159701171.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41030.71 Da        Isoelectric Point: 5.1334

>NTDB_id=357593 GR129_RS11480 WP_236576274.1 2625345..2626460(-) (rpoS) [Streptomyces sp. HF10]
MPSPAYILEVALVQTQTLTPTAQSTGAGVDETDAEPDGGAAVPPQGRAPLHPEAAAEEAPAAARTESAGPSADLFRQYLR
EIGRIPLLTAAEEVELARRVEAGLFAEEKLSNTPDLDGELAHDLDRLVVMGRVAKRRLIEANLRLVVSVAKRYVGRGLTM
LDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE
EVAAHLDLPPERVGEVLRLAQEPISLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLKQHLDAVLSTLGERERKVVQL
RYGLLDGRPRTLEEIGRLFGVTRERIRQIESKTLNKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=357593 GR129_RS11480 WP_236576274.1 2625345..2626460(-) (rpoS) [Streptomyces sp. HF10]
ATGCCGAGTCCGGCGTACATCCTGGAGGTCGCCCTCGTGCAGACCCAGACCCTCACCCCTACCGCCCAGAGCACCGGTGC
CGGCGTGGACGAGACGGACGCGGAGCCCGACGGCGGCGCGGCCGTGCCGCCGCAGGGGCGTGCCCCCCTGCATCCGGAGG
CGGCCGCCGAGGAGGCACCGGCCGCGGCGCGCACCGAGAGCGCCGGGCCGTCCGCCGACCTGTTCCGGCAGTACCTGCGC
GAGATCGGCCGCATCCCGCTGCTCACCGCCGCCGAGGAGGTCGAGCTGGCCCGCCGGGTCGAGGCCGGGCTGTTCGCGGA
GGAGAAGTTGAGCAACACCCCTGATCTCGACGGCGAGTTGGCGCACGACCTGGACCGGCTCGTGGTGATGGGGAGGGTGG
CCAAGAGAAGGCTGATCGAGGCCAACCTGCGGCTCGTCGTCTCCGTCGCCAAGCGGTACGTCGGGCGCGGCCTCACCATG
CTCGACCTCGTCCAGGAGGGCAACCTCGGGCTGATCCGCGCCGTGGAGAAGTTCGACTACGCGCGCGGCTACAAGTTCTC
CACGTACGCCACCTGGTGGATCCGGCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGCACCATCCGCGTCCCGGTGC
ACGTCGTGGAGCTGATCAACCGCGTCGTCCGCGTACAGCGCCGCATGCTCCAGGAACGCGGGTACGAGCCGACCCCCGAG
GAGGTCGCCGCCCATCTCGACCTCCCGCCCGAGCGGGTCGGCGAGGTGCTGCGGCTCGCCCAGGAACCCATCTCGCTGCA
CGCCCCCGTCGGCGAGGAGGACGATGTGGCGCTCGGCGACCTCATCGAGGACGGCGACGCCGCGAGCCCCGTGGAGTCCG
CCGCCTTCCTGCTGCTCAAGCAGCACCTGGACGCCGTGCTGTCCACGCTGGGCGAGCGCGAGCGCAAGGTCGTACAACTG
CGCTACGGCCTCCTCGACGGCCGCCCCCGCACCCTGGAGGAGATCGGCCGCCTCTTCGGCGTCACCCGCGAACGGATCCG
CCAGATCGAGTCCAAGACGCTGAACAAGCTCCGGGACCACGCGTACGCGGACCAGCTGAGGGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(306-358)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(73-106)

Sigma-70 region 2 (Sigma70_r2)

(138-207)

Sigma-70 region 3 (Sigma70_r3)

(217-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.228

92.183

0.38