Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GR129_RS11475 Genome accession   NZ_CP047144
Coordinates   2623354..2625282 (+) Length   642 a.a.
NCBI ID   WP_145488335.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2618354..2630282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS11460 (GR129_11460) - 2619676..2619981 (+) 306 WP_159708145.1 YtxH domain-containing protein -
  GR129_RS11465 (GR129_11465) - 2620009..2621456 (+) 1448 Protein_2292 FGGY family carbohydrate kinase -
  GR129_RS11470 (GR129_11470) rcrP 2621621..2623354 (+) 1734 WP_159701162.1 ABC transporter ATP-binding protein Regulator
  GR129_RS11475 (GR129_11475) rcrQ 2623354..2625282 (+) 1929 WP_145488335.1 ABC transporter ATP-binding protein Regulator
  GR129_RS11480 (GR129_11480) rpoS 2625345..2626460 (-) 1116 WP_236576274.1 RNA polymerase sigma factor Regulator
  GR129_RS11485 (GR129_11485) dnaG 2626565..2628472 (-) 1908 WP_159701165.1 DNA primase -
  GR129_RS11490 (GR129_11490) - 2628519..2629784 (-) 1266 WP_159701168.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69687.24 Da        Isoelectric Point: 6.9884

>NTDB_id=357592 GR129_RS11475 WP_145488335.1 2623354..2625282(+) (rcrQ) [Streptomyces sp. HF10]
MSGPMGRMMAGGGPDQRSMDFKGSGRRLLGQFRPERLTVYGLLVCVVVSVALSVIGPKILGRATDLVFSGIIGRQLPAGT
TKAQVLAQMRAHGKGAVADMLQSTDFTPGKGIDFGAVGDVLLLALVTFLVAGLLMAVATRLVNRSVNRTMYRLRESVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIVGVLAMMFWVSWILALVALVTVPLSFFVATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQEESAKQFAEQNEALYEAAFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEADPVPGERPAELRGRVRLE
HVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDVRRMTRDELRSGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKGMAKLAAGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=357592 GR129_RS11475 WP_145488335.1 2623354..2625282(+) (rcrQ) [Streptomyces sp. HF10]
ATGTCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGACCAGCGGTCGATGGACTTCAAGGGGTCGGGCAGACG
ACTGCTCGGCCAGTTCAGGCCCGAACGGCTGACCGTGTACGGCCTGCTGGTCTGCGTGGTGGTCAGCGTGGCCCTCAGCG
TGATCGGCCCGAAGATCCTCGGCCGCGCCACCGACCTGGTCTTCTCCGGCATCATCGGCCGGCAGCTGCCCGCCGGGACC
ACCAAGGCGCAGGTGCTGGCGCAGATGCGGGCGCACGGCAAGGGCGCCGTCGCGGACATGCTCCAGAGCACCGACTTCAC
CCCGGGCAAGGGCATCGACTTCGGCGCGGTCGGCGACGTACTGCTGCTCGCGCTCGTCACCTTCCTGGTCGCCGGGCTGC
TGATGGCGGTGGCGACACGGCTGGTCAACCGGTCGGTGAACCGCACGATGTACCGGCTGCGCGAGTCCGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTCTCGCGGGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGGTGCTGACCATCGTCGGTGTGCTGGCGATGATGT
TCTGGGTCTCCTGGATCCTCGCGCTGGTCGCGCTGGTCACGGTGCCGCTGTCGTTCTTCGTCGCCACCCGGGTCGGCAAG
CGTTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACGGGCAAGCTCAACGCCCATGTGGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCTGAGCAGAACGAGGCTCTGTACGAGGCCG
CGTTCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTGGCGTCCGGCGCGCTGTCCATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCCATGCCGCTGACGCAGGTGGCCTCCATGGCGAACCTGGTGCAGTCCGGGGTGGCCTCGGCGGAGCGGGTCTTCGAAC
TCCTCGACGCCGAGGAGCAGGAGGCGGACCCGGTGCCGGGCGAGCGGCCCGCGGAGCTGCGCGGGCGGGTGCGTCTTGAG
CATGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGATCTCTCGCTCACGGTGGAGCCCGGTCACACGGTGGC
CATCGTCGGCCCCACGGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGACGTCTCCGGCGGGCGGA
TCACCCTGGACGGGGTGGACGTACGGAGGATGACCCGGGACGAACTGCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCCTCGCGGGAGGTCACCCGGGGCGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCGGACCGGTTCATCCGGACGCTGCCCGAGGGTTACGACACCGTGATCGACGACGAGGGCTCGG
GGGTGAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTGGACGAG
GCGACGAGTTCCGTGGACACGCGGACCGAGGTGCTGATCCAGAAGGGCATGGCCAAACTCGCCGCCGGACGTACGTCGTT
CGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCACACCGAGCTGTTGGCGGCGGACGGCGCGTACGCCCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.262

0.388

Multiple sequence alignment