Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GLX30_RS16880 Genome accession   NZ_CP047140
Coordinates   3838138..3838737 (-) Length   199 a.a.
NCBI ID   WP_005314484.1    Uniprot ID   B5HA39
Organism   Streptomyces sp. Tu 2975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3833138..3843737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS16860 (GLX30_16950) - 3833911..3834570 (-) 660 WP_159689340.1 SigE family RNA polymerase sigma factor -
  GLX30_RS16865 (GLX30_16955) - 3834874..3835965 (-) 1092 WP_159689343.1 aspartate-semialdehyde dehydrogenase -
  GLX30_RS16870 (GLX30_16960) - 3835962..3837233 (-) 1272 WP_005314479.1 aspartate kinase -
  GLX30_RS16875 (GLX30_16965) - 3837486..3838145 (-) 660 WP_159689346.1 DUF5063 domain-containing protein -
  GLX30_RS16880 (GLX30_16970) recR 3838138..3838737 (-) 600 WP_005314484.1 recombination mediator RecR Machinery gene
  GLX30_RS16885 (GLX30_16975) - 3838817..3839152 (-) 336 WP_078535290.1 YbaB/EbfC family nucleoid-associated protein -
  GLX30_RS16890 (GLX30_16980) - 3839589..3840265 (+) 677 Protein_3411 SLATT domain-containing protein -
  GLX30_RS16895 (GLX30_16985) - 3840388..3841038 (-) 651 WP_159695084.1 hypothetical protein -
  GLX30_RS16900 (GLX30_16990) - 3841319..3842050 (-) 732 WP_159689349.1 GntR family transcriptional regulator -
  GLX30_RS16905 (GLX30_16995) - 3842166..3842597 (+) 432 WP_159689352.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21853.18 Da        Isoelectric Point: 5.1558

>NTDB_id=357539 GLX30_RS16880 WP_005314484.1 3838138..3838737(-) (recR) [Streptomyces sp. Tu 2975]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQTEPADVRRLAHALLEVKDKVRFCAVCGNVAQQEQCNICRDPRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=357539 GLX30_RS16880 WP_005314484.1 3838138..3838737(-) (recR) [Streptomyces sp. Tu 2975]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATCCTCCAGACGGAGCCGGCCGACGTGCGCCGGCTCGCGCACGCCCTCCTCGAGGTCAAGGACAAGGTCC
GCTTCTGCGCGGTCTGCGGGAACGTGGCCCAGCAGGAGCAGTGCAACATCTGCCGCGACCCCCGTCGCGACCCCTCGGTG
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGCACGCGTGAGTTCCGAGGGCGCTACCACGTCCTTGG
CGGGGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGACCTGCGGATCCGCGAGCTGCTGGCCCGCCTCGCGGACGGCA
CGGTCACCGAGCTGATCCTGGCCACGGACCCCAATCTGGAGGGCGAGGCCACGGCAACGTACCTCGCCAGAATGATCAAA
CCGATGGGTTTGAAGGTCACGAGGCTGGCCAGTGGACTCCCTGTCGGGGGAGACTTGGAATACGCCGACGAGGTCACGCT
CGGGCGTGCCTTCGAGGGGAGACGACTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5HA39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462