Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   GLX30_RS16105 Genome accession   NZ_CP047140
Coordinates   3666948..3668390 (+) Length   480 a.a.
NCBI ID   WP_159689000.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3661948..3673390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS16085 (GLX30_16170) - 3662351..3663169 (-) 819 WP_159688989.1 sugar phosphate isomerase/epimerase -
  GLX30_RS16090 (GLX30_16175) - 3663193..3664125 (-) 933 WP_159688992.1 Ppx/GppA phosphatase family protein -
  GLX30_RS16095 (GLX30_16180) - 3664166..3664972 (+) 807 WP_159688995.1 hypothetical protein -
  GLX30_RS16100 (GLX30_16185) - 3665081..3666775 (-) 1695 WP_159688997.1 hypothetical protein -
  GLX30_RS16105 (GLX30_16190) radA/sms 3666948..3668390 (+) 1443 WP_159689000.1 DNA repair protein RadA Machinery gene
  GLX30_RS16110 (GLX30_16195) disA 3668435..3669559 (+) 1125 WP_005314096.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  GLX30_RS16115 (GLX30_16200) - 3669640..3670491 (-) 852 WP_159689003.1 hypothetical protein -
  GLX30_RS16120 (GLX30_16205) - 3670667..3671320 (+) 654 WP_159689006.1 phosphatase PAP2 family protein -
  GLX30_RS16125 (GLX30_16210) - 3671540..3672454 (+) 915 WP_159689009.1 A/G-specific adenine glycosylase -
  GLX30_RS16130 (GLX30_16215) - 3672656..3673228 (+) 573 WP_159689012.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 50498.74 Da        Isoelectric Point: 8.4898

>NTDB_id=357534 GLX30_RS16105 WP_159689000.1 3666948..3668390(+) (radA/sms) [Streptomyces sp. Tu 2975]
MAARTKSAKDRPSYRCTDCGWTTVKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARTTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKALHDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPPGMKVTEVADMGDALRVLPKGRQGSSGGGSRKERTEAPREAEARR

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=357534 GLX30_RS16105 WP_159689000.1 3666948..3668390(+) (radA/sms) [Streptomyces sp. Tu 2975]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGTCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCACCCGCCGTCCGCACCACCGCCGCCGGCC
GTGTGTCCACCGCCGCCCTGCCCATCGGCCAGGTCGACGGCCGCCAGGCGACCGCCCGCACCACCGGCGTCGACGAGCTC
GACCGGGTACTCGGCGGCGGCCTGGTGCCCGGCGCCGTCGTGCTCCTCGCGGGCGAGCCCGGCGTCGGGAAGTCGACGCT
GCTGCTCGACGTCGCGGCGAAGGCGGCGAGCGACGAGCACCGCACGCTCTACGTGACCGGCGAGGAGTCCGCCAGTCAGG
TGCGGCTGCGCGCCGACCGGATCAAGGCGCTGCACGACCACCTCTACCTCGCGGCGGAGACCGACCTCTCGGCCGTGCTC
GGCCACCTGGACGCGGTCAAGCCCTCCCTGCTGGTCCTGGACTCGGTGCAGACCGTGGCGTCCCCCGAGATCGACGGGGC
CCCCGGCGGCATGGCCCAGGTCCGGGAGGTCGCGGGCGCACTCATCCGCGCCTCCAAGGAGCGCGGCATGTCGACGCTGC
TCGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCCCGGCTGCTCGAGCACCTGGTGGACGTGGTGCTCTCCTTC
GAGGGCGACCGGCATGCCCGGCTGCGTCTGGTCAGAGGCGTGAAGAACCGGTACGGAGCGACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGTCTCGCCGACCCGTCCGGACTGTTTCTGACCCGCCGCGCCGAGCCGGTCCCCG
GCACCTGCCTGACGGTGACCCTGGAGGGCCGCCGCCCCTTGGTCGCCGAGGTGCAGGCCCTCACCGTCGACTCCCAGATC
CCCTCCCCCCGGCGCACCACGTCCGGCCTGGAGACCTCCCGCGTGTCGATGATGCTGGCCGTGCTCGAGCAGCGCGGCCG
CATCACCGCCCTCGGCAAGCGCGACATCTACAGCGCCACGGTCGGGGGGGTGAAGCTCTCCGAGCCCGCCGCGGACCTGG
CGATCGCGCTCGCCCTGGCCTCGGCGGCCAGCGACGTGCCCCTGCCGAAGAACCTGGTCGCCATCGGCGAGGTCGGTCTC
GCCGGCGAGGTGAGGAGGGTCACGGGCGTCCAGCGCAGACTGGCGGAGGCCCACCGTCTGGGCTTCACGCACGCCCTGGT
CCCCTCCGATCCGGGGAAGATCCCACCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGTGACGCCCTGAGGGTGCTGC
CGAAAGGCCGTCAAGGGTCCTCAGGGGGCGGCTCGCGCAAAGAGCGGACGGAGGCCCCACGGGAGGCGGAAGCTCGCCGG
TAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(83-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

94.375

0.415
  radA Streptococcus mitis NCTC 12261

42.92

94.167

0.404
  radA Streptococcus pneumoniae Rx1

42.478

94.167

0.4
  radA Streptococcus pneumoniae TIGR4

42.478

94.167

0.4
  radA Streptococcus pneumoniae D39

42.478

94.167

0.4
  radA Streptococcus pneumoniae R6

42.478

94.167

0.4
  radA Streptococcus mitis SK321

43.807

90.833

0.398