Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LL3_RS19520 Genome accession   NC_017190
Coordinates   3848943..3849632 (-) Length   229 a.a.
NCBI ID   WP_014472386.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LL3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3843943..3854632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS19500 (LL3_04097) - 3844847..3845194 (-) 348 WP_013354148.1 YxeA family protein -
  LL3_RS19505 (LL3_04098) yxdM 3845208..3847076 (-) 1869 WP_013354149.1 ABC transporter permease YxdM -
  LL3_RS19510 (LL3_04099) yxdL 3847051..3847824 (-) 774 WP_013354150.1 ABC transporter ATP-binding protein YxdL -
  LL3_RS19515 (LL3_04100) yxdK 3847969..3848946 (-) 978 WP_013354151.1 two-component system sensor histidine kinase YxdK -
  LL3_RS19520 (LL3_04101) braR 3848943..3849632 (-) 690 WP_014472386.1 two-component system response regulator YxdJ Regulator
  LL3_RS19525 (LL3_04102) fba 3849740..3850612 (-) 873 WP_013354153.1 class II fructose-1,6-bisphosphate aldolase -
  LL3_RS19530 (LL3_04103) iolI 3850615..3851457 (-) 843 WP_014472387.1 2-keto-myo-inositol isomerase -
  LL3_RS19535 (LL3_04104) - 3851544..3852413 (-) 870 WP_013354155.1 sugar phosphate isomerase/epimerase family protein -
  LL3_RS19540 (LL3_04105) - 3852433..3853467 (-) 1035 WP_013354156.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26529.30 Da        Isoelectric Point: 4.9502

>NTDB_id=35752 LL3_RS19520 WP_014472386.1 3848943..3849632(-) (braR) [Bacillus amyloliquefaciens LL3]
MNKIMIVEDSEDIRGLLRNYLEKYGYQTVAAADFTAVLDVFLQEKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGVGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=35752 LL3_RS19520 WP_014472386.1 3848943..3849632(-) (braR) [Bacillus amyloliquefaciens LL3]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCGGAATTATCTTGAAAAATACGGATATCA
AACCGTGGCGGCCGCGGATTTTACGGCTGTTCTTGATGTTTTTTTACAGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCCTATGACGGCTATTATTGGTGCCGCCAGATCCGTCAGCACTCCACAAGCCCGATCATTTTTATTTCAGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGGGAGAAAGTGCTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTCTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACATGGGACACCGA
TATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTAT
CAATTGAATCGGTGCGGGGCGTAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.256

97.38

0.402

Multiple sequence alignment