Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   DVT08_RS08985 Genome accession   NZ_CP047134
Coordinates   1990428..1992584 (-) Length   718 a.a.
NCBI ID   WP_012338048.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain IVIA5901     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985428..1997584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVT08_RS08970 (DVT08_009125) - 1986789..1988057 (-) 1269 WP_128283951.1 lipase family protein -
  DVT08_RS08975 (DVT08_009130) - 1988642..1989844 (-) 1203 WP_012338046.1 cytochrome P450 -
  DVT08_RS08980 - 1990207..1990353 (-) 147 WP_012338047.1 hypothetical protein -
  DVT08_RS08985 (DVT08_009135) recG 1990428..1992584 (-) 2157 WP_012338048.1 ATP-dependent DNA helicase RecG Machinery gene
  DVT08_RS08990 (DVT08_009140) - 1992593..1992976 (-) 384 WP_024749306.1 RidA family protein -
  DVT08_RS08995 (DVT08_009145) - 1993179..1995350 (-) 2172 WP_012338049.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 78623.25 Da        Isoelectric Point: 8.3729

>NTDB_id=357486 DVT08_RS08985 WP_012338048.1 1990428..1992584(-) (recG) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
MLRARSHAIDLNVAGNAPLSVLPRVGPVLAGKCAARGIFTLQDLWLLLPLRYEDRTRLTPIAELQDGVAVQIEARVEAVE
RSFRYRPLLRVVLSDDAHHILTMRFFHFRAAQIARFTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPV
YPVIDGVGPAIVRQLIREALEHLPTDAVLELLPDVWLSDLGLPTLRTALLIMHRPPLDADIARLMVGTHPAQQRLSLEEL
LAHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALA
ALLAVEQNKQVALAAPTALLAEQHFINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFH
DLALTIVDEQHRFGVHQRLLLRDKGAIAGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRP
ELVERIRLACAQGRQVYWVCTLIDESQTEAEQAPPSSNDIGHRSEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRT
MRAFKYNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQ
TNDGFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANVLLDESPQLADQVIARWIGSAVRYASA

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=357486 DVT08_RS08985 WP_012338048.1 1990428..1992584(-) (recG) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
ATGCTGCGTGCACGTTCGCATGCCATCGACTTGAACGTAGCTGGCAATGCCCCATTGTCGGTGCTGCCGCGGGTTGGGCC
GGTATTAGCTGGAAAATGCGCTGCACGTGGCATCTTCACCTTGCAGGATTTGTGGCTACTGCTCCCATTACGTTATGAGG
ACCGTACCCGGCTAACTCCGATTGCCGAGCTTCAGGATGGGGTTGCGGTTCAGATCGAGGCCCGAGTGGAAGCGGTGGAG
CGTAGTTTCCGTTACCGGCCGCTATTACGTGTGGTGTTGTCCGACGACGCACATCACATACTGACGATGCGTTTTTTCCA
TTTTCGCGCCGCACAGATTGCACGGTTTACTGTCGGCACACGGGTGCGTGCGTATGGCGTACCCAAACTTGGCCAATATG
GTTGGGAGATTGTCCATCCCAGCTACCGCATTCTTGCCCCTGGTGAAGCTGTCAGCCTCAATGACTGCTTGGACCCGGTG
TATCCGGTGATTGATGGTGTGGGGCCTGCCATCGTGCGTCAGCTCATCCGCGAAGCGTTGGAACATTTACCTACGGATGC
AGTCTTAGAACTCTTGCCAGACGTTTGGTTGAGTGACCTTGGCCTGCCAACGCTGCGTACTGCCCTACTGATCATGCACC
GGCCCCCGCTGGATGCGGATATTGCCCGATTGATGGTGGGCACTCACCCCGCGCAGCAGCGCTTGTCGTTGGAAGAATTG
CTTGCCCACCAACTCAGCCTGCGTCGCCAGCGTATTGCATTGCAACGTCATTCCGCCCCCGCATTGCCTGATGGAGCGGC
TTTGGTGGCCTCTTTGTTGCATGCACTGCCGTTTCACCTCACTGCTGCGCAGCAACGGGTATTCGCCCAGATTGCTGCTG
ATGTGGCCAAGCCGGTCCCAATGCTGCGTCTTGTGCAGGGTGATGTTGGCAGCGGTAAGACCGTGGTTGCAGCATTGGCC
GCATTGCTTGCTGTTGAGCAAAACAAGCAGGTGGCTCTGGCGGCACCGACAGCGTTACTGGCCGAGCAACACTTTATCAA
CCTGCGTGACTGGCTGGAGCCATTGGGCGTGCGTGTGCATTGGTTGGCTGCCAAGGTGACCGGCAAGGCCCGTCTCCAAG
CGCTGAATGATGTGGCCTCTGGTGATGCGCAGGTGGTGGTCGGCACACATGCCCTGATGCAGGAGTCTGTGGTGTTTCAT
GACTTGGCACTGACCATTGTCGATGAACAGCACCGTTTTGGCGTCCATCAGCGCTTGTTGCTTCGTGACAAAGGGGCCAT
TGCTGGCATTGTGCCGCATCAGTTAGTGATGACCGCTACACCGATTCCACGCACCTTAGCGATGGCTGCGTATGCTGATT
TGGATGTTTCGGTGATTGACGAAATGCCGCCTGGCCGTACCCCGGTGCAAACGAATGTATTGAGTGCTGAGCGTCGCCCG
GAATTGGTGGAACGTATCCGTCTGGCTTGTGCTCAGGGGCGCCAGGTTTATTGGGTGTGTACGCTGATCGACGAAAGCCA
AACGGAAGCAGAACAGGCACCCCCCAGCAGTAACGATATTGGGCATCGCAGCGAAGTACAGGCGGCACAGGCCACCTATG
AAGCACTGTCTGCACAATTGCCTGGTGTCCGTGTCGGACTCGTGCATGGGCGCATGAAAGCAGCGGAAAAACAGCGGACA
ATGCGTGCATTCAAATACAACGAAATTGATGTCTTGGTTGCTACCACGGTGATTGAGGTGGGTGTCGATGTCCCCAATGC
GTCGCTCATGATTATCGAAAATGCTGAGCGTTTGGGTTTAGCGCAACTCCATCAGTTACGTGGTCGGGTCGGACGTGGTT
CTGTTGTGTCAAGTTGCGTTCTGTTGTATCAGCCCCCGCTGTCGATGCTGGCGCGTCAGCGTCTGCAAATCATGCGCCAG
ACGAACGATGGTTTTGCGATTGCTGAAAAAGATCTGGAATTACGTGGTCCCGGCGAATTGTTGGGGACACGTCAAACAGG
TCTTGCAGCGTTTCGTGTTGCTGACCTTGCCCGCGATGCCCATCTGCTGCCCCGCGTGTATTCGTTGGCGAACGTGTTGC
TTGACGAATCGCCACAGTTAGCTGATCAAGTGATTGCGCGCTGGATTGGTAGTGCGGTGCGTTATGCATCCGCCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(283-442)

RecG wedge domain (RecG_wedge)

(35-181)

Helicase conserved C-terminal domain (Helicase_C)

(534-613)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(641-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.832

96.379

0.461
  recG/mmsA Streptococcus pneumoniae R6

37.755

95.543

0.361
  recG/mmsA Streptococcus pneumoniae R36A

37.755

95.543

0.361