Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   E1949_RS07830 Genome accession   NZ_CP039160
Coordinates   1561254..1562324 (-) Length   356 a.a.
NCBI ID   WP_000776406.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Lr6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1556254..1567324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1949_RS07790 (E1949_07925) gcvPA 1556431..1557777 (-) 1347 WP_000019683.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E1949_RS07795 (E1949_07930) gcvT 1557797..1558888 (-) 1092 WP_000093346.1 glycine cleavage system aminomethyltransferase GcvT -
  E1949_RS07800 (E1949_07935) - 1559047..1559571 (-) 525 WP_001015121.1 shikimate kinase -
  E1949_RS07805 (E1949_07940) - 1559561..1559707 (-) 147 WP_001789879.1 hypothetical protein -
  E1949_RS07810 (E1949_07945) comGF 1559804..1560301 (-) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  E1949_RS07815 (E1949_07950) comGE 1560219..1560518 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E1949_RS07820 (E1949_07955) comGD 1560505..1560951 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  E1949_RS07825 (E1949_07960) comGC 1560929..1561240 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E1949_RS07830 (E1949_07965) comGB 1561254..1562324 (-) 1071 WP_000776406.1 competence type IV pilus assembly protein ComGB Machinery gene
  E1949_RS07835 (E1949_07970) comGA 1562296..1563270 (-) 975 WP_000697227.1 competence type IV pilus ATPase ComGA Machinery gene
  E1949_RS07840 (E1949_07975) - 1563322..1563945 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E1949_RS07845 (E1949_07980) - 1563942..1564271 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E1949_RS07850 (E1949_07985) - 1564271..1565257 (-) 987 WP_000161314.1 ROK family glucokinase -
  E1949_RS07855 (E1949_07990) - 1565254..1565457 (-) 204 WP_000087561.1 YqgQ family protein -
  E1949_RS07860 (E1949_07995) - 1565438..1566901 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41387.79 Da        Isoelectric Point: 10.0606

>NTDB_id=357297 E1949_RS07830 WP_000776406.1 1561254..1562324(-) (comGB) [Staphylococcus aureus strain Lr6]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGATILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=357297 E1949_RS07830 WP_000776406.1 1561254..1562324(-) (comGB) [Staphylococcus aureus strain Lr6]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA
AAAATAAGCAATTAGGTGCCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGTAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCC
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994

Multiple sequence alignment