Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   E5Y90_RS12810 Genome accession   NZ_CP039143
Coordinates   2701204..2702766 (+) Length   520 a.a.
NCBI ID   WP_174660383.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2696204..2707766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS12790 (E5Y90_12835) - 2696669..2697973 (+) 1305 WP_174660382.1 homoserine dehydrogenase -
  E5Y90_RS12795 (E5Y90_12840) thrC 2698031..2699170 (+) 1140 WP_151204050.1 threonine synthase -
  E5Y90_RS12800 (E5Y90_12845) - 2699280..2700329 (-) 1050 WP_151204051.1 serine hydrolase -
  E5Y90_RS12805 (E5Y90_12850) - 2700550..2701185 (+) 636 WP_151204052.1 response regulator -
  E5Y90_RS12810 (E5Y90_12855) pilS 2701204..2702766 (+) 1563 WP_174660383.1 sensor histidine kinase Regulator
  E5Y90_RS12815 (E5Y90_12860) pilR 2702785..2704203 (+) 1419 WP_373688374.1 sigma-54-dependent transcriptional regulator Regulator
  E5Y90_RS12820 (E5Y90_12865) - 2704204..2705376 (-) 1173 WP_174660385.1 S41 family peptidase -
  E5Y90_RS12825 (E5Y90_12870) gpmI 2705403..2706950 (-) 1548 WP_174660386.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59745.61 Da        Isoelectric Point: 6.2475

>NTDB_id=357226 E5Y90_RS12810 WP_174660383.1 2701204..2702766(+) (pilS) [Acinetobacter sp. 10FS3-1]
MEPSHYSQLNQYHLGIWYGAYRLIISTGLLLIFLLTYPNLTADYQYPQLYYYALGIWVAVNAVQLFTLKFVRRWIQAQFI
LIFFTDVSVLSLLTLATNGPNLHIGLLFVIAIFSASLLLDAHKALFITLIAVISVIYQHFIGSIFAFSSLTNIGNSALLA
FLFFVVYGSGQIAVRRFQILENLSFSQSLELYQLQNINRYILEQIETGYLVLDENYHVVLSNPAACHLLGIEPTYSQERF
SLYHSQYDLFELVHFENLENGEQFQFESQQSRYNIHVQVQKLIVPHQTLILLVLQDAQKLNQKVQQLKLAALGQLSASIA
HEIRNPLAAIVQANDLYQDSEKEQQHLLNQMISRQANRIDRIIQDTLSMVKNRETHPVMIHLNEFIPLFIQEDLADVADQ
IQLNSDTSLYIQFDEAQFRQILINLIRNAIRHNAADADHIQLNIHPYQHKVWIDIRDFGTGVDVPDQAKLFKPFYSTAIN
GTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRMIP

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=357226 E5Y90_RS12810 WP_174660383.1 2701204..2702766(+) (pilS) [Acinetobacter sp. 10FS3-1]
ATGGAACCTTCTCACTATTCACAGCTCAATCAATATCATCTGGGGATCTGGTATGGTGCTTATCGTCTGATTATCAGTAC
CGGTCTGCTGCTGATTTTTCTGCTGACCTATCCGAACCTGACAGCCGACTATCAGTATCCACAGCTCTATTATTATGCGC
TGGGGATTTGGGTGGCGGTGAACGCGGTTCAGCTGTTCACGCTCAAATTTGTCCGGCGCTGGATTCAAGCCCAGTTTATT
CTGATCTTTTTTACTGATGTTAGTGTACTCAGCCTGTTAACCCTGGCCACCAATGGTCCGAATCTGCATATCGGGCTATT
GTTTGTCATTGCCATCTTTTCAGCTTCACTGCTACTGGATGCCCATAAGGCCTTATTTATCACACTTATTGCTGTAATTA
GTGTGATTTATCAGCATTTTATTGGCAGCATTTTTGCCTTTTCTTCCTTAACCAATATCGGGAATAGTGCATTACTCGCT
TTCCTGTTTTTTGTGGTCTATGGCAGTGGCCAGATTGCGGTCCGTCGCTTTCAAATTCTGGAGAATCTGAGCTTTTCCCA
ATCTCTTGAATTGTACCAGTTACAGAATATTAACCGCTATATTCTCGAGCAGATTGAAACCGGTTATCTAGTTCTGGATG
AAAATTATCATGTGGTGCTGAGCAATCCAGCTGCCTGTCATCTGCTCGGCATAGAGCCTACCTATAGCCAAGAACGATTT
TCACTCTATCATTCACAATATGACCTGTTTGAGTTGGTTCACTTTGAGAATCTGGAAAATGGGGAACAGTTCCAGTTCGA
GTCCCAGCAAAGTCGCTATAACATTCATGTACAGGTACAAAAACTGATCGTTCCGCATCAGACCTTGATCCTGCTGGTTT
TACAGGATGCGCAAAAGTTAAATCAAAAGGTGCAGCAATTAAAGCTTGCTGCGCTGGGGCAACTCTCGGCCAGCATCGCG
CATGAAATCCGGAACCCTCTGGCTGCCATTGTACAGGCCAATGACCTCTATCAGGATTCAGAAAAAGAACAGCAGCATCT
CCTGAACCAGATGATCAGCCGGCAGGCCAATCGGATTGACCGGATTATTCAGGACACCTTGAGCATGGTGAAAAACAGGG
AAACGCATCCTGTCATGATTCATCTGAATGAATTCATTCCACTGTTTATTCAGGAAGATTTAGCCGATGTGGCTGATCAG
ATTCAGTTGAATAGCGATACGTCTCTTTATATTCAGTTTGATGAAGCCCAATTCCGTCAGATTCTGATTAACCTGATCCG
TAATGCCATCCGGCACAATGCTGCCGATGCCGACCATATTCAATTGAATATTCATCCTTATCAGCATAAAGTATGGATTG
ATATCCGGGACTTTGGCACCGGTGTCGATGTACCGGATCAGGCGAAGTTATTCAAGCCTTTTTATAGCACCGCAATTAAC
GGTACCGGACTGGGACTGTATTTATCACATAGTTTTTGTGAAGCAAATCAGGCACAATTAAATTATATACAACAAGAACA
AGGCGCATGCTTTCGCATTAGCTGCCAACGAATGATACCGTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-514)

His Kinase A (phospho-acceptor) domain (HisKA)

(311-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.416

97.115

0.567

Multiple sequence alignment