Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   E5Y90_RS11980 Genome accession   NZ_CP039143
Coordinates   2531853..2532488 (+) Length   211 a.a.
NCBI ID   WP_174660287.1    Uniprot ID   A0A6N0LIZ4
Organism   Acinetobacter sp. 10FS3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2526853..2537488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS11970 (E5Y90_12020) - 2528987..2529787 (-) 801 WP_174660285.1 NAD(P)H-binding protein -
  E5Y90_RS11975 (E5Y90_12025) recG 2529821..2531866 (+) 2046 WP_174660286.1 ATP-dependent DNA helicase RecG -
  E5Y90_RS11980 (E5Y90_12030) comF 2531853..2532488 (+) 636 WP_174660287.1 ComF family protein Machinery gene
  E5Y90_RS11985 (E5Y90_12035) - 2532495..2532896 (-) 402 WP_174660288.1 NUDIX hydrolase -
  E5Y90_RS11990 (E5Y90_12040) - 2532925..2533515 (-) 591 WP_174660600.1 TIGR00730 family Rossman fold protein -
  E5Y90_RS11995 (E5Y90_12045) - 2533668..2534681 (+) 1014 WP_151205491.1 CorA family divalent cation transporter -
  E5Y90_RS12000 (E5Y90_12050) - 2534828..2535118 (-) 291 WP_174660289.1 STAS domain-containing protein -
  E5Y90_RS12005 (E5Y90_12055) - 2535134..2535766 (-) 633 WP_151205493.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  E5Y90_RS12010 (E5Y90_12060) - 2535785..2536462 (-) 678 WP_174660290.1 outer membrane lipid asymmetry maintenance protein MlaD -
  E5Y90_RS12015 (E5Y90_12065) mlaE 2536462..2537241 (-) 780 WP_174660291.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24442.56 Da        Isoelectric Point: 9.0138

>NTDB_id=357216 E5Y90_RS11980 WP_174660287.1 2531853..2532488(+) (comF) [Acinetobacter sp. 10FS3-1]
MLMFNILQQGKHWLNRLQPCQLCHTDYQALHSVCQDCWQQLPWAHQTIQRQDIQFQVACEYAYPMDRLIQLFKYEQKLHL
EPLLAGALLSLNFPKVSAVVPMPISTERLVERGYNQSLLLAKQVARQLNVPLWQPVQRMKQHSQKGLSRLERMEDIEAQF
QIATSSTIRYRKVLIIDDVVTTGSSMRALSHKLKELGCQHIYAACLAGARM

Nucleotide


Download         Length: 636 bp        

>NTDB_id=357216 E5Y90_RS11980 WP_174660287.1 2531853..2532488(+) (comF) [Acinetobacter sp. 10FS3-1]
ATGCTTATGTTTAATATACTGCAACAAGGCAAGCACTGGCTGAACCGTTTACAGCCCTGCCAGTTATGCCACACGGACTA
TCAGGCCCTGCATTCTGTCTGCCAAGATTGCTGGCAGCAGTTGCCGTGGGCTCATCAGACCATTCAACGTCAGGACATCC
AGTTTCAGGTGGCCTGTGAGTATGCCTATCCGATGGATCGCTTAATCCAGTTATTTAAATATGAGCAAAAGCTGCATCTG
GAGCCACTTTTGGCCGGTGCCCTGCTGAGTTTGAATTTTCCTAAAGTCAGTGCTGTGGTGCCGATGCCGATCTCCACAGA
ACGCCTGGTCGAACGCGGCTATAACCAGTCTTTATTACTGGCCAAGCAGGTGGCCCGACAACTCAATGTGCCGCTCTGGC
AGCCTGTTCAGCGTATGAAACAGCATTCACAAAAAGGCTTAAGCCGTCTGGAACGCATGGAAGATATTGAAGCGCAGTTC
CAAATCGCGACTTCTTCAACAATACGCTACCGGAAAGTCCTGATCATTGATGATGTCGTTACAACAGGCAGCTCGATGCG
TGCTTTGAGCCACAAACTCAAAGAGCTGGGTTGCCAGCATATTTATGCAGCTTGTCTGGCTGGCGCCAGAATGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0LIZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.42

98.104

0.583
  comF Acinetobacter baumannii D1279779

59.42

98.104

0.583

Multiple sequence alignment