Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | E5Y90_RS05300 | Genome accession | NZ_CP039143 |
| Coordinates | 1131822..1132250 (+) | Length | 142 a.a. |
| NCBI ID | WP_174660564.1 | Uniprot ID | - |
| Organism | Acinetobacter sp. 10FS3-1 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1126822..1137250
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Y90_RS05270 (E5Y90_05340) | kdsB | 1127621..1128382 (+) | 762 | WP_174659607.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| E5Y90_RS05275 (E5Y90_05345) | - | 1128397..1129377 (+) | 981 | WP_174659608.1 | DNA polymerase III subunit delta' | - |
| E5Y90_RS05280 (E5Y90_05350) | - | 1129393..1129734 (+) | 342 | WP_151205056.1 | PilZ domain-containing protein | - |
| E5Y90_RS05285 (E5Y90_05355) | - | 1129763..1130536 (+) | 774 | WP_174659609.1 | TatD family hydrolase | - |
| E5Y90_RS05290 (E5Y90_05360) | - | 1130576..1131190 (+) | 615 | WP_151205054.1 | TetR/AcrR family transcriptional regulator | - |
| E5Y90_RS05295 (E5Y90_05365) | - | 1131200..1131739 (+) | 540 | WP_174659610.1 | pilus assembly FimT family protein | - |
| E5Y90_RS05300 (E5Y90_05370) | xcpV | 1131822..1132250 (+) | 429 | WP_174660564.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| E5Y90_RS05305 (E5Y90_05375) | xcpW | 1132247..1132873 (+) | 627 | WP_151205052.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| E5Y90_RS05310 (E5Y90_05380) | gspK | 1132886..1133851 (+) | 966 | WP_218955305.1 | type II secretion system minor pseudopilin GspK | - |
| E5Y90_RS05315 (E5Y90_05385) | - | 1133998..1134594 (+) | 597 | WP_151206807.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| E5Y90_RS05320 (E5Y90_05390) | ung | 1134639..1135352 (+) | 714 | WP_151205050.1 | uracil-DNA glycosylase | - |
| E5Y90_RS05325 (E5Y90_05395) | - | 1135349..1136470 (+) | 1122 | WP_151205049.1 | enoyl-CoA hydratase/isomerase family protein | - |
| E5Y90_RS05330 (E5Y90_05400) | tadA | 1136477..1136992 (+) | 516 | WP_151206809.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15796.05 Da Isoelectric Point: 10.2074
>NTDB_id=357206 E5Y90_RS05300 WP_174660564.1 1131822..1132250(+) (xcpV) [Acinetobacter sp. 10FS3-1]
MICKTGAFRSKKSRFQSASGFTLLEVMVALAIFATAAMTLTKVAMQYTQSTAHAVLRTKAQFVALNEAAQMEINQEWLSG
TSSRQLTQQNETWQIDKRSEPTISPNVQRIELQVSLINTESGQVESGISTLTFFNHRKNPVP
MICKTGAFRSKKSRFQSASGFTLLEVMVALAIFATAAMTLTKVAMQYTQSTAHAVLRTKAQFVALNEAAQMEINQEWLSG
TSSRQLTQQNETWQIDKRSEPTISPNVQRIELQVSLINTESGQVESGISTLTFFNHRKNPVP
Nucleotide
Download Length: 429 bp
>NTDB_id=357206 E5Y90_RS05300 WP_174660564.1 1131822..1132250(+) (xcpV) [Acinetobacter sp. 10FS3-1]
ATGATTTGCAAAACAGGTGCTTTTCGCTCCAAGAAGAGCCGATTTCAGTCTGCCTCAGGTTTTACCTTGCTAGAAGTTAT
GGTGGCTTTGGCCATCTTTGCTACAGCAGCCATGACCCTGACCAAAGTGGCGATGCAATATACCCAGTCTACTGCCCATG
CAGTACTTAGAACTAAAGCCCAATTTGTTGCATTGAATGAAGCGGCACAAATGGAAATCAATCAGGAGTGGCTGAGTGGA
ACATCTTCAAGGCAACTCACCCAGCAGAACGAAACCTGGCAGATTGATAAACGGAGCGAGCCGACTATTAGCCCCAATGT
GCAGCGGATTGAGTTACAAGTTAGTCTCATTAATACTGAAAGTGGGCAAGTGGAATCTGGTATTAGCACCCTGACATTTT
TTAATCACCGTAAGAATCCAGTACCATGA
ATGATTTGCAAAACAGGTGCTTTTCGCTCCAAGAAGAGCCGATTTCAGTCTGCCTCAGGTTTTACCTTGCTAGAAGTTAT
GGTGGCTTTGGCCATCTTTGCTACAGCAGCCATGACCCTGACCAAAGTGGCGATGCAATATACCCAGTCTACTGCCCATG
CAGTACTTAGAACTAAAGCCCAATTTGTTGCATTGAATGAAGCGGCACAAATGGAAATCAATCAGGAGTGGCTGAGTGGA
ACATCTTCAAGGCAACTCACCCAGCAGAACGAAACCTGGCAGATTGATAAACGGAGCGAGCCGACTATTAGCCCCAATGT
GCAGCGGATTGAGTTACAAGTTAGTCTCATTAATACTGAAAGTGGGCAAGTGGAATCTGGTATTAGCACCCTGACATTTT
TTAATCACCGTAAGAATCCAGTACCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
69.748 |
83.803 |
0.585 |