Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   E5Y90_RS05305 Genome accession   NZ_CP039143
Coordinates   1132247..1132873 (+) Length   208 a.a.
NCBI ID   WP_151205052.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1127247..1137873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS05270 (E5Y90_05340) kdsB 1127621..1128382 (+) 762 WP_174659607.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  E5Y90_RS05275 (E5Y90_05345) - 1128397..1129377 (+) 981 WP_174659608.1 DNA polymerase III subunit delta' -
  E5Y90_RS05280 (E5Y90_05350) - 1129393..1129734 (+) 342 WP_151205056.1 PilZ domain-containing protein -
  E5Y90_RS05285 (E5Y90_05355) - 1129763..1130536 (+) 774 WP_174659609.1 TatD family hydrolase -
  E5Y90_RS05290 (E5Y90_05360) - 1130576..1131190 (+) 615 WP_151205054.1 TetR/AcrR family transcriptional regulator -
  E5Y90_RS05295 (E5Y90_05365) - 1131200..1131739 (+) 540 WP_174659610.1 pilus assembly FimT family protein -
  E5Y90_RS05300 (E5Y90_05370) xcpV 1131822..1132250 (+) 429 WP_174660564.1 type II secretion system minor pseudopilin GspI Machinery gene
  E5Y90_RS05305 (E5Y90_05375) xcpW 1132247..1132873 (+) 627 WP_151205052.1 type II secretion system minor pseudopilin GspJ Machinery gene
  E5Y90_RS05310 (E5Y90_05380) gspK 1132886..1133851 (+) 966 WP_218955305.1 type II secretion system minor pseudopilin GspK -
  E5Y90_RS05315 (E5Y90_05385) - 1133998..1134594 (+) 597 WP_151206807.1 6-pyruvoyl trahydropterin synthase family protein -
  E5Y90_RS05320 (E5Y90_05390) ung 1134639..1135352 (+) 714 WP_151205050.1 uracil-DNA glycosylase -
  E5Y90_RS05325 (E5Y90_05395) - 1135349..1136470 (+) 1122 WP_151205049.1 enoyl-CoA hydratase/isomerase family protein -
  E5Y90_RS05330 (E5Y90_05400) tadA 1136477..1136992 (+) 516 WP_151206809.1 tRNA adenosine(34) deaminase TadA -
  E5Y90_RS05335 (E5Y90_05405) - 1137051..1137482 (+) 432 WP_174659611.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23876.09 Da        Isoelectric Point: 5.2961

>NTDB_id=357207 E5Y90_RS05305 WP_151205052.1 1132247..1132873(+) (xcpW) [Acinetobacter sp. 10FS3-1]
MKPQGFTLVELLVAITIFAVLSALGWQVFDYINKSKDQNAMHEYRLNQLQDTYQQILRDTVQAVPLTANINGQIQPALVL
QNGRFNFSKTGVTDPLQEGISPDERVEYQYRSEEQKLYRLKYRNLNQTGRDQPESSVLLNHVEQFEILVLNPNELTQWPD
SSADLNQVAQKQRLPKGIKIKLTVNGVNYEWIFSLLNTDFLLAPQGQP

Nucleotide


Download         Length: 627 bp        

>NTDB_id=357207 E5Y90_RS05305 WP_151205052.1 1132247..1132873(+) (xcpW) [Acinetobacter sp. 10FS3-1]
ATGAAGCCTCAAGGATTTACCTTAGTTGAATTATTGGTCGCCATTACCATTTTTGCGGTGCTTTCTGCACTAGGTTGGCA
GGTTTTTGATTATATTAATAAAAGCAAAGACCAGAATGCGATGCATGAATACCGTTTAAACCAGTTGCAGGATACTTATC
AGCAGATTTTACGTGATACGGTGCAGGCGGTACCACTGACAGCCAATATAAATGGCCAGATTCAACCTGCACTGGTTTTA
CAAAATGGACGTTTTAATTTTAGTAAAACAGGCGTAACTGATCCTTTGCAGGAAGGTATTTCGCCTGATGAACGCGTGGA
ATACCAGTACCGTTCAGAGGAGCAAAAGCTTTACCGTTTAAAATACCGTAATCTGAACCAGACCGGACGTGATCAGCCAG
AATCCAGCGTCTTGCTCAATCATGTCGAACAATTTGAAATTTTAGTGCTCAATCCGAATGAGCTGACTCAGTGGCCAGAT
TCTTCAGCTGATCTCAACCAGGTGGCGCAAAAACAGCGCCTGCCGAAAGGCATTAAAATCAAATTAACCGTAAATGGGGT
GAATTATGAATGGATATTCAGCCTGCTAAATACAGATTTTCTGCTTGCTCCCCAAGGCCAACCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.049

98.558

0.572

Multiple sequence alignment