Detailed information NTG0357067

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal118_RS18620
• Genome accession: NZ_CP039102
• Coordinates: 2938368..2939321 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-118
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2933368..2944321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal118_RS14820 (Psal118_02946)	-	2933647..2934003 (+)	357	WP_048875886.1	class I SAM-dependent methyltransferase	-
Psal118_RS14825 (Psal118_02947)	-	2934000..2935403 (-)	1404	WP_053856766.1	IS4 family transposase	-
Psal118_RS14830 (Psal118_02948)	-	2935523..2936083 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal118_RS14835 (Psal118_02949)	-	2936241..2936807 (-)	567	WP_017376236.1	hypothetical protein	-
Psal118_RS19295 (Psal118_02950)	-	2937010..2938065 (+)	1056	WP_230387410.1	hypothetical protein	-
Psal118_RS18620 (Psal118_02951)	pilA	2938368..2939321 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal118_RS14845 (Psal118_02952)	-	2939585..2940280 (-)	696	WP_027243087.1	hypothetical protein	-
Psal118_RS19300	-	2940321..2940455 (-)	135	Protein_2982	IS3 family transposase	-
Psal118_RS19305 (Psal118_02953)	-	2940738..2941565 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal118_RS19310 (Psal118_02954)	-	2941478..2941765 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal118_RS14860 (Psal118_02955)	-	2941831..2941998 (+)	168	WP_017376230.1	hypothetical protein	-
Psal118_RS14865 (Psal118_02956)	-	2942106..2943215 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=357067 Psal118_RS18620 WP_069971666.1 2938368..2939321(+) (pilA) [Piscirickettsia salmonis strain Psal-118]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=357067 Psal118_RS18620 WP_069971666.1 2938368..2939321(+) (pilA) [Piscirickettsia salmonis strain Psal-118]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517