Detailed information NTG0357009

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Psal110_RS14825
• Genome accession: NZ_CP039081
• Coordinates: 2935717..2936670 (+)
• Length: 317 a.a.
• NCBI ID: WP_069971666.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain Psal-110
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2930717..2941670

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Psal110_RS14800 (Psal110_02945)	-	2930785..2931141 (+)	357	WP_048875886.1	class I SAM-dependent methyltransferase	-
Psal110_RS14805 (Psal110_02946)	-	2931138..2932541 (-)	1404	WP_053856766.1	IS4 family transposase	-
Psal110_RS14810 (Psal110_02947)	-	2932661..2933221 (-)	561	WP_027243085.1	YbfB/YjiJ family MFS transporter	-
Psal110_RS14815 (Psal110_02948)	-	2933379..2933945 (-)	567	WP_017376236.1	hypothetical protein	-
Psal110_RS14825	pilA	2935717..2936670 (+)	954	WP_069971666.1	signal recognition particle-docking protein FtsY	Machinery gene
Psal110_RS14830 (Psal110_02950)	-	2936934..2937629 (-)	696	WP_027243087.1	hypothetical protein	-
Psal110_RS19235	-	2937670..2937804 (-)	135	Protein_2965	IS3 family transposase	-
Psal110_RS19240 (Psal110_02951)	-	2938087..2938914 (-)	828	WP_335645905.1	IS3 family transposase	-
Psal110_RS19245 (Psal110_02952)	-	2938827..2939114 (-)	288	WP_017376231.1	IS3 family transposase	-
Psal110_RS14845 (Psal110_02953)	-	2939180..2939347 (+)	168	WP_017376230.1	hypothetical protein	-
Psal110_RS14850 (Psal110_02954)	-	2939455..2940564 (+)	1110	WP_017376229.1	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 34301.26 Da
• Isoelectric Point: 6.3084

>NTDB_id=357009 Psal110_RS14825 WP_069971666.1 2935717..2936670(+) (pilA) [Piscirickettsia salmonis strain Psal-110]
MEKSNTNSNSEKKQGLFARLKSGLSKTRENLASGITTLLIGEKKIDDELLEDLETQLLMADVGIDATTHIITDLTKRLDR
NELTDTQKAMEALKENLSSMLTPCSVPLEIPKSPDPFVILVVGVNGAGKTTTIGKLAKHYQNQGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVVAQHTGADSASVIFDAYNSAKAHGCDILIADTAGRLHTQSNLMEELKKVKRVLGKVDNTAPHEVLL
VLDSGTGQNAINQAEQFHHAVNVSGIVMTKLDGTAKGGVIFAIAKKMQLPIRYIGVGEKIDDLRPFKSDEFIEALFG

Nucleotide

• Length: 954 bp

>NTDB_id=357009 Psal110_RS14825 WP_069971666.1 2935717..2936670(+) (pilA) [Piscirickettsia salmonis strain Psal-110]
ATTGAAAAAAGCAACACCAATAGTAATAGCGAGAAAAAGCAAGGCTTATTCGCCCGCTTAAAATCTGGTCTCAGTAAGAC
CCGTGAAAATCTGGCCTCAGGTATTACTACACTTTTAATCGGTGAGAAAAAAATCGATGATGAGCTGCTGGAAGATTTAG
AAACTCAGCTACTCATGGCAGACGTCGGCATTGATGCAACGACCCATATCATTACTGACCTAACCAAGCGTCTTGATCGC
AACGAACTTACAGATACCCAAAAAGCGATGGAAGCGCTCAAAGAAAACCTATCCAGCATGCTTACGCCTTGTAGTGTTCC
TCTAGAGATTCCCAAATCACCAGACCCCTTTGTTATTTTAGTCGTCGGCGTCAATGGTGCAGGTAAAACCACAACCATAG
GCAAACTTGCGAAACACTACCAGAACCAAGGCAAAAGCGTCATGCTCGCTGCAGGTGATACCTTCCGCGCTGCCGCGGTT
GAACAATTGCAAGTCTGGGGAGAGCGTAACGATATTCCGGTAGTTGCCCAGCATACCGGTGCTGATAGCGCATCAGTCAT
TTTCGATGCGTATAACTCAGCCAAAGCACATGGTTGTGATATTTTAATTGCCGATACCGCAGGCCGACTGCATACACAAA
GCAACTTAATGGAAGAGCTTAAAAAAGTAAAACGCGTGCTTGGCAAAGTCGACAATACAGCACCGCATGAAGTTTTATTA
GTTCTAGACTCAGGCACCGGGCAAAACGCTATTAACCAAGCTGAGCAGTTTCATCACGCTGTCAATGTATCAGGCATTGT
CATGACTAAACTCGATGGTACTGCTAAAGGTGGGGTCATTTTTGCCATTGCTAAAAAAATGCAACTACCGATCCGTTATA
TCGGTGTCGGTGAAAAAATCGATGATCTACGCCCTTTTAAATCAGATGAATTTATTGAGGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (33-97)

• SRP54-type protein, GTPase domain (SRP54) (116-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.074	97.476	0.517