Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   A7X85_RS41955 Genome accession   NZ_CP047019
Coordinates   9487535..9488161 (-) Length   208 a.a.
NCBI ID   WP_055720844.1    Uniprot ID   -
Organism   Streptomyces sp. ST1015     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 9482535..9493161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7X85_RS46025 - 9482913..9484104 (+) 1192 Protein_8369 DUF6777 domain-containing protein -
  A7X85_RS41930 (A7X85_42140) - 9484197..9484646 (+) 450 WP_055720839.1 ATP-binding protein -
  A7X85_RS41935 (A7X85_42145) - 9484678..9485550 (-) 873 WP_055720840.1 RNA polymerase sigma factor SigF -
  A7X85_RS41940 (A7X85_42150) - 9485656..9486435 (-) 780 WP_112475674.1 class I SAM-dependent methyltransferase -
  A7X85_RS41945 (A7X85_42155) - 9486570..9486926 (+) 357 WP_055720842.1 helix-turn-helix domain-containing protein -
  A7X85_RS41950 (A7X85_42160) - 9486942..9487532 (-) 591 WP_055720843.1 ClpP family protease -
  A7X85_RS41955 (A7X85_42165) clpP 9487535..9488161 (-) 627 WP_055720844.1 ATP-dependent Clp protease proteolytic subunit Regulator
  A7X85_RS41960 (A7X85_42170) - 9488269..9489450 (-) 1182 WP_112475673.1 epoxide hydrolase family protein -
  A7X85_RS41965 (A7X85_42175) - 9489578..9490060 (+) 483 WP_055720846.1 VOC family protein -
  A7X85_RS41970 (A7X85_42180) - 9490127..9491005 (-) 879 WP_055720847.1 geranyl diphosphate 2-C-methyltransferase -
  A7X85_RS41975 (A7X85_42185) - 9491071..9492105 (-) 1035 WP_112475672.1 family 2 encapsulin nanocompartment cargo protein terpene cyclase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22708.79 Da        Isoelectric Point: 5.0620

>NTDB_id=356994 A7X85_RS41955 WP_055720844.1 9487535..9488161(-) (clpP) [Streptomyces sp. ST1015]
MTPPIRLADGDTQPTRFDDHLANQLLAQRMVFLGTQVDEVSAQRVCTQLLVLAAEDPRTDIVLCINSPGGEVHSGLAIHD
TMQLVPNDVATLAMGFAASMGQFLLTVGAPGKRYALPHARVMMHQPSAGIGGTTADIEIQAENLEYTKRTIERLTAERTG
QPQETVSRDGDRDRWFTAEEAREYGMVDRIVSSLADLRPAAPARRMGL

Nucleotide


Download         Length: 627 bp        

>NTDB_id=356994 A7X85_RS41955 WP_055720844.1 9487535..9488161(-) (clpP) [Streptomyces sp. ST1015]
ATGACTCCACCCATCAGGCTCGCCGACGGCGACACCCAGCCCACCCGTTTCGACGACCACCTCGCCAACCAGCTCCTCGC
GCAGCGCATGGTGTTCCTGGGGACGCAGGTCGACGAGGTGTCCGCGCAGCGCGTGTGCACGCAGCTCCTCGTCCTCGCCG
CCGAGGACCCGCGCACGGACATCGTGCTGTGCATCAACAGCCCCGGCGGCGAGGTCCATTCGGGGCTCGCGATCCACGAC
ACGATGCAGCTCGTCCCGAACGACGTGGCGACGCTCGCCATGGGGTTCGCGGCCAGCATGGGCCAGTTCCTGCTGACCGT
GGGCGCGCCCGGGAAGCGGTACGCGCTGCCGCACGCCCGAGTGATGATGCACCAGCCGTCCGCCGGGATCGGCGGCACGA
CCGCTGACATCGAGATCCAGGCGGAGAACCTGGAGTACACCAAGCGCACGATCGAACGCCTCACGGCCGAGCGCACCGGC
CAGCCCCAGGAGACGGTGTCCCGGGACGGCGACCGCGACCGCTGGTTCACGGCCGAGGAGGCCAGGGAGTACGGCATGGT
CGACCGGATCGTCAGCTCGCTGGCGGACCTGCGCCCGGCGGCCCCGGCACGACGGATGGGACTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.191

85.577

0.404
  clpP Streptococcus pneumoniae Rx1

44

84.135

0.37
  clpP Streptococcus pneumoniae D39

44

84.135

0.37
  clpP Streptococcus pneumoniae R6

44

84.135

0.37
  clpP Streptococcus pneumoniae TIGR4

44

84.135

0.37
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

43.86

82.212

0.361