Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   A7X85_RS26045 Genome accession   NZ_CP047019
Coordinates   5784692..5785291 (+) Length   199 a.a.
NCBI ID   WP_055724474.1    Uniprot ID   A0ABW9I0U9
Organism   Streptomyces sp. ST1015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5779692..5790291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7X85_RS26020 (A7X85_26140) - 5780123..5780572 (+) 450 WP_109364039.1 hypothetical protein -
  A7X85_RS26025 (A7X85_26145) - 5780687..5781349 (+) 663 WP_112476190.1 response regulator transcription factor -
  A7X85_RS26030 (A7X85_26150) - 5781399..5782700 (+) 1302 WP_240001526.1 sensor histidine kinase -
  A7X85_RS26035 (A7X85_26155) - 5782839..5783576 (-) 738 WP_409122847.1 SLATT domain-containing protein -
  A7X85_RS26040 (A7X85_26160) - 5784180..5784521 (+) 342 WP_029183439.1 YbaB/EbfC family nucleoid-associated protein -
  A7X85_RS26045 (A7X85_26165) recR 5784692..5785291 (+) 600 WP_055724474.1 recombination mediator RecR Machinery gene
  A7X85_RS26050 (A7X85_26170) - 5785299..5785958 (+) 660 WP_055724481.1 DUF5063 domain-containing protein -
  A7X85_RS26055 (A7X85_26175) - 5786050..5786886 (-) 837 WP_112476354.1 PhzF family phenazine biosynthesis protein -
  A7X85_RS26060 (A7X85_26180) - 5787036..5787224 (+) 189 WP_112476353.1 hypothetical protein -
  A7X85_RS26065 (A7X85_26185) - 5787369..5787890 (+) 522 WP_055724477.1 SgcJ/EcaC family oxidoreductase -
  A7X85_RS26070 (A7X85_26190) - 5787856..5789238 (-) 1383 WP_112476352.1 sensor histidine kinase -
  A7X85_RS26075 (A7X85_26195) - 5789235..5789978 (-) 744 WP_112476351.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21700.08 Da        Isoelectric Point: 5.1616

>NTDB_id=356952 A7X85_RS26045 WP_055724474.1 5784692..5785291(+) (recR) [Streptomyces sp. ST1015]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKAKVRFCATCGNVAQEELCGICRDPRRDATV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=356952 A7X85_RS26045 WP_055724474.1 5784692..5785291(+) (recR) [Streptomyces sp. ST1015]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGTCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAACCGACGGACGTACGCCGCCTCGCGCACGCCCTGCTGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGAAACGTCGCGCAGGAAGAGCTGTGCGGCATCTGCCGCGACCCCCGCCGCGACGCCACGGTG
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGCACGCGGGAGTTCCGCGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCCATCGAGGGCGTAGGACCCGACGACCTGAGGATCAGGGAGCTCCTGGCCCGCCTCGCGGACGGCA
CGGTCACCGAGCTCATCCTCGCGACCGACCCCAACCTTGAGGGTGAGGCGACGGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467