Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | LL3_RS09350 | Genome accession | NC_017190 |
| Coordinates | 1886954..1887316 (+) | Length | 120 a.a. |
| NCBI ID | WP_013352421.1 | Uniprot ID | A0A9P1JH52 |
| Organism | Bacillus amyloliquefaciens LL3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1881954..1892316
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL3_RS09320 (LL3_01960) | - | 1882410..1882643 (+) | 234 | WP_003153997.1 | DUF896 domain-containing protein | - |
| LL3_RS09325 (LL3_01961) | recP/tkt | 1882810..1884813 (+) | 2004 | WP_013352417.1 | transketolase | Machinery gene |
| LL3_RS09330 (LL3_01962) | sirA | 1884964..1885410 (+) | 447 | WP_013352418.1 | sporulation inhibitor of replication protein SirA | - |
| LL3_RS09335 (LL3_01963) | - | 1885496..1885714 (+) | 219 | WP_003153994.1 | YneF family protein | - |
| LL3_RS09340 (LL3_01964) | - | 1885787..1885960 (-) | 174 | WP_088030684.1 | aspartyl-phosphate phosphatase Spo0E family protein | - |
| LL3_RS09345 (LL3_01965) | - | 1886162..1886869 (+) | 708 | WP_088030531.1 | cytochrome c biogenesis protein CcdA | - |
| LL3_RS09350 (LL3_01966) | pilH | 1886954..1887316 (+) | 363 | WP_013352421.1 | response regulator | Machinery gene |
| LL3_RS09355 (LL3_01967) | - | 1887396..1887887 (+) | 492 | WP_088030532.1 | CcdC family protein | - |
| LL3_RS09360 (LL3_01968) | - | 1887915..1888343 (-) | 429 | WP_013352423.1 | DUF2621 domain-containing protein | - |
| LL3_RS09365 (LL3_01969) | - | 1888578..1888949 (-) | 372 | WP_013352424.1 | spore coat protein | - |
| LL3_RS09370 (LL3_01970) | - | 1889043..1889189 (-) | 147 | WP_003153984.1 | small acid-soluble spore protein P | - |
| LL3_RS09375 (LL3_01971) | sspO | 1889219..1889365 (-) | 147 | WP_003153982.1 | acid-soluble spore protein SspO | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13259.62 Da Isoelectric Point: 5.2063
>NTDB_id=35687 LL3_RS09350 WP_013352421.1 1886954..1887316(+) (pilH) [Bacillus amyloliquefaciens LL3]
MTRVLVVDDAKFMRVKIREILESANYIVAGEAADGEEALAVYQKIRPDLVTMDITMPVKNGIQALQDILAFDPKAHVIMC
TAMRQQRIVLEAIELGAKDFIVKPFEASKVLEAVGRVTGT
MTRVLVVDDAKFMRVKIREILESANYIVAGEAADGEEALAVYQKIRPDLVTMDITMPVKNGIQALQDILAFDPKAHVIMC
TAMRQQRIVLEAIELGAKDFIVKPFEASKVLEAVGRVTGT
Nucleotide
Download Length: 363 bp
>NTDB_id=35687 LL3_RS09350 WP_013352421.1 1886954..1887316(+) (pilH) [Bacillus amyloliquefaciens LL3]
ATGACACGAGTTTTAGTTGTAGATGACGCCAAGTTCATGAGGGTGAAAATCAGAGAAATTCTGGAATCGGCGAATTACAT
AGTGGCCGGAGAAGCGGCTGACGGCGAGGAAGCCCTGGCGGTATATCAAAAAATCCGTCCCGACCTGGTGACAATGGATA
TTACCATGCCGGTCAAAAACGGTATACAGGCGCTGCAGGATATTTTAGCTTTTGACCCGAAAGCCCATGTCATCATGTGC
ACGGCCATGCGGCAGCAGCGGATTGTTCTGGAAGCGATTGAATTAGGCGCTAAAGACTTTATCGTTAAACCGTTTGAAGC
TTCTAAAGTGCTGGAGGCAGTAGGCAGGGTGACGGGAACGTAA
ATGACACGAGTTTTAGTTGTAGATGACGCCAAGTTCATGAGGGTGAAAATCAGAGAAATTCTGGAATCGGCGAATTACAT
AGTGGCCGGAGAAGCGGCTGACGGCGAGGAAGCCCTGGCGGTATATCAAAAAATCCGTCCCGACCTGGTGACAATGGATA
TTACCATGCCGGTCAAAAACGGTATACAGGCGCTGCAGGATATTTTAGCTTTTGACCCGAAAGCCCATGTCATCATGTGC
ACGGCCATGCGGCAGCAGCGGATTGTTCTGGAAGCGATTGAATTAGGCGCTAAAGACTTTATCGTTAAACCGTTTGAAGC
TTCTAAAGTGCTGGAGGCAGTAGGCAGGGTGACGGGAACGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
36.667 |
100 |
0.367 |