Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   E5093_RS13455 Genome accession   NZ_CP039031
Coordinates   2828489..2829124 (+) Length   211 a.a.
NCBI ID   WP_177156080.1    Uniprot ID   -
Organism   Acinetobacter indicus strain yy_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2823489..2834124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5093_RS13445 (E5093_13560) - 2825608..2826423 (-) 816 WP_177156079.1 NAD(P)H-binding protein -
  E5093_RS13450 (E5093_13565) recG 2826457..2828502 (+) 2046 WP_005180314.1 ATP-dependent DNA helicase RecG -
  E5093_RS13455 (E5093_13570) comF 2828489..2829124 (+) 636 WP_177156080.1 ComF family protein Machinery gene
  E5093_RS13460 (E5093_13575) - 2829147..2829548 (-) 402 WP_034597959.1 NUDIX hydrolase -
  E5093_RS13465 (E5093_13580) - 2829551..2830144 (-) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  E5093_RS13470 (E5093_13585) - 2830297..2831310 (+) 1014 WP_104471548.1 CorA family divalent cation transporter -
  E5093_RS13475 (E5093_13590) - 2831447..2831734 (-) 288 WP_177156081.1 STAS domain-containing protein -
  E5093_RS13480 (E5093_13595) - 2831746..2832378 (-) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  E5093_RS13485 (E5093_13600) - 2832397..2833068 (-) 672 WP_016658517.1 outer membrane lipid asymmetry maintenance protein MlaD -
  E5093_RS13490 (E5093_13605) mlaE 2833068..2833847 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24287.35 Da        Isoelectric Point: 9.0802

>NTDB_id=356847 E5093_RS13455 WP_177156080.1 2828489..2829124(+) (comF) [Acinetobacter indicus strain yy_1]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKASVCRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPMPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=356847 E5093_RS13455 WP_177156080.1 2828489..2829124(+) (comF) [Acinetobacter indicus strain yy_1]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAACAACTGCCTTGGTTAAAGGCCAGTGTCTGCCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAACAGCAACTGCATTAT
CAGCCTTTACTGGCAGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCTATTGTGCCGATGCCAGTGGCAACCGA
GCGACTGGCAGAGCGAGGTTATCACCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.502

99.052

0.55
  comF Acinetobacter baumannii strain A118

55.502

99.052

0.55

Multiple sequence alignment