Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   E5093_RS01160 Genome accession   NZ_CP039031
Coordinates   249258..250826 (-) Length   522 a.a.
NCBI ID   WP_177155250.1    Uniprot ID   -
Organism   Acinetobacter indicus strain yy_1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 244258..255826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5093_RS01145 (E5093_01150) gpmI 245074..246621 (+) 1548 WP_177155248.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  E5093_RS01150 (E5093_01155) - 246645..247814 (+) 1170 WP_177155249.1 S41 family peptidase -
  E5093_RS01155 (E5093_01160) pilR 247831..249186 (-) 1356 WP_171525655.1 sigma-54-dependent transcriptional regulator Regulator
  E5093_RS01160 (E5093_01165) pilS 249258..250826 (-) 1569 WP_177155250.1 sensor histidine kinase Regulator
  E5093_RS01165 (E5093_01170) - 250841..251476 (-) 636 WP_005181577.1 response regulator -
  E5093_RS01170 (E5093_01175) - 251694..252776 (+) 1083 WP_127799456.1 serine hydrolase -
  E5093_RS01175 (E5093_01180) thrC 252869..254014 (-) 1146 WP_177155251.1 threonine synthase -
  E5093_RS01180 (E5093_01185) - 254072..255376 (-) 1305 WP_177155252.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59943.62 Da        Isoelectric Point: 7.1911

>NTDB_id=356820 E5093_RS01160 WP_177155250.1 249258..250826(-) (pilS) [Acinetobacter indicus strain yy_1]
MDIRRTQAELNQYHLGLWYGAYRLVIAFCLLLIYLLTTQTLNHDYQHPRLYAASLVLYFIFSCAQLLYFRYVRHRIPLQL
TLIFSVDVLVLSSLTFALDGPSLHLSLLFVIAIFAATLLLEKSKALFITLVAMICVTYQHFVGTLLDFSSLDRIGQSALL
SFLFFIIYRFGQIAVRRFQILEHLNFSQSLELNRLKNINRYILEQTDMGYLVLDENCHIMVSNPAACHLLGINPLYAFDK
YPLYKVQPDLFQLLQFDQLSNGEKFQFESQLSHFLIHIQVQKLVVPQQTLTLLVLQDARQINQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANRLLAGSAPDQQQMLSQMIDKQSQRIDKIIDDTLSMVKNKETTPVQIDLARFISQLIQDDLADLAS
QIQVSQPEPLQILFDEPQLRQVLINLIRNAQRHNAPDHPIELQLYRQQDTVYMDVKDYGSGVASHDIRYLFQPFFSTEIS
GTGLGLYLSHSFCEANRAKLRYVEQKQGACFRIECSPVDVNK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=356820 E5093_RS01160 WP_177155250.1 249258..250826(-) (pilS) [Acinetobacter indicus strain yy_1]
ATGGATATCCGCCGTACGCAAGCTGAACTGAACCAGTACCATCTCGGGCTATGGTACGGGGCGTATCGGCTGGTGATTGC
CTTCTGTTTACTGCTGATTTATTTACTCACCACCCAAACCCTCAATCATGATTATCAGCATCCACGGCTGTATGCCGCCA
GTCTGGTGCTGTATTTTATTTTTAGCTGTGCCCAGCTGCTGTATTTTCGCTATGTCCGGCACAGGATTCCGTTACAACTC
ACGCTGATTTTCAGTGTCGATGTACTGGTGCTCAGCAGCCTGACCTTTGCGCTGGATGGACCGAGCCTGCATTTAAGCCT
GCTGTTTGTGATTGCGATTTTCGCCGCGACGTTATTGCTGGAAAAAAGCAAGGCGCTGTTCATTACCCTGGTGGCAATGA
TTTGTGTCACCTATCAGCATTTTGTTGGCACATTACTGGATTTTTCCTCTCTGGATCGCATCGGGCAAAGTGCCCTGCTC
TCGTTCCTGTTTTTTATTATTTACCGTTTTGGCCAGATTGCCGTCCGCCGTTTCCAGATTCTGGAACACCTGAACTTTTC
CCAGTCACTGGAACTGAACCGGCTGAAGAATATTAACCGCTATATTCTGGAACAGACCGATATGGGTTATCTGGTGCTGG
ATGAAAACTGCCATATTATGGTCAGTAATCCGGCCGCCTGCCATTTGCTGGGTATTAATCCGCTGTATGCTTTTGACAAA
TATCCGCTGTATAAAGTACAGCCCGATCTGTTTCAATTATTGCAGTTTGACCAGCTCTCCAACGGCGAAAAATTCCAGTT
TGAATCACAGCTGAGTCATTTCCTGATCCATATACAGGTACAAAAGCTGGTGGTGCCGCAGCAGACCTTAACCTTGCTGG
TGCTGCAGGATGCGCGGCAAATCAACCAGCGCGTGCAGCAACTGAAACTGGCAGCACTGGGCCAGCTTTCGGCCAGTATT
GCCCATGAAATCCGTAATCCGCTGGCGGCCATTGTCCAGGCCAATCGCCTGCTGGCCGGCAGCGCCCCCGATCAGCAGCA
GATGCTGAGCCAGATGATTGACAAGCAGTCGCAGCGCATTGACAAGATCATTGATGACACCCTGAGCATGGTGAAAAATA
AGGAAACCACACCGGTGCAGATTGATCTGGCGCGTTTTATTTCGCAGCTGATTCAGGATGATCTGGCCGATCTGGCCAGC
CAGATTCAGGTCAGCCAGCCCGAACCTCTGCAGATTCTGTTTGATGAACCCCAGCTGCGTCAGGTGCTGATTAACCTGAT
CCGTAATGCCCAGCGCCACAATGCGCCAGATCATCCGATTGAACTACAACTTTATCGCCAGCAGGACACGGTCTATATGG
ATGTCAAAGATTATGGCAGCGGCGTGGCTTCACATGATATTCGCTACCTGTTTCAACCATTTTTTAGTACCGAAATTAGC
GGAACTGGTTTAGGATTATACTTATCACATAGTTTCTGCGAGGCCAATCGGGCCAAGCTGCGCTATGTAGAACAAAAACA
AGGAGCATGTTTCAGGATTGAATGCTCACCTGTTGACGTAAATAAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.208

96.743

0.573

Multiple sequence alignment