Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | E5A72_RS15600 | Genome accession | NZ_CP039025 |
| Coordinates | 3216880..3217260 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836915.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii ATCC 17978 substr. PMR-High | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3211880..3222260
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5A72_RS15570 (E5A72_15570) | kdsB | 3212783..3213544 (+) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| E5A72_RS15575 (E5A72_15575) | - | 3213556..3214536 (+) | 981 | WP_001075412.1 | DNA polymerase III subunit delta' | - |
| E5A72_RS15580 (E5A72_15580) | - | 3214548..3214889 (+) | 342 | WP_001183025.1 | PilZ domain-containing protein | - |
| E5A72_RS15585 (E5A72_15585) | - | 3214907..3215680 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| E5A72_RS15590 (E5A72_15590) | - | 3215718..3216326 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| E5A72_RS15595 (E5A72_15595) | - | 3216336..3216890 (+) | 555 | WP_000841375.1 | type II secretion system protein | - |
| E5A72_RS15600 (E5A72_15600) | xcpV | 3216880..3217260 (+) | 381 | WP_000836915.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| E5A72_RS15605 (E5A72_15605) | xcpW | 3217260..3217961 (+) | 702 | WP_000594584.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| E5A72_RS15610 (E5A72_15610) | gspK | 3217961..3218920 (+) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| E5A72_RS15615 (E5A72_15615) | - | 3219150..3219746 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| E5A72_RS15620 (E5A72_15620) | ung | 3219797..3220510 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| E5A72_RS15625 (E5A72_15625) | - | 3220507..3221631 (+) | 1125 | WP_000982062.1 | enoyl-CoA hydratase/isomerase family protein | - |
| E5A72_RS15630 (E5A72_15630) | tadA | 3221638..3222141 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=356810 E5A72_RS15600 WP_000836915.1 3216880..3217260(+) (xcpV) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=356810 E5A72_RS15600 WP_000836915.1 3216880..3217260(+) (xcpV) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
98.413 |
100 |
0.984 |