Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   E5A72_RS08800 Genome accession   NZ_CP039025
Coordinates   1788400..1789821 (-) Length   473 a.a.
NCBI ID   WP_049594865.1    Uniprot ID   A0A1E3M4U9
Organism   Acinetobacter baumannii ATCC 17978 substr. PMR-High     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1783400..1794821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5A72_RS08785 (E5A72_08785) lptG 1784453..1785523 (+) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -
  E5A72_RS08790 (E5A72_08790) gpmI 1785649..1787196 (+) 1548 WP_000128747.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  E5A72_RS08795 (E5A72_08795) - 1787212..1788396 (+) 1185 WP_000939111.1 S41 family peptidase -
  E5A72_RS08800 (E5A72_08800) pilR 1788400..1789821 (-) 1422 WP_049594865.1 sigma-54-dependent transcriptional regulator Regulator
  E5A72_RS08805 (E5A72_08805) pilS 1789846..1791414 (-) 1569 WP_001160327.1 sensor histidine kinase Regulator
  E5A72_RS08810 (E5A72_08810) - 1791425..1792060 (-) 636 WP_000633799.1 response regulator -
  E5A72_RS08815 (E5A72_08815) pbpG 1792273..1793319 (+) 1047 WP_005140205.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  E5A72_RS08820 (E5A72_08820) thrC 1793428..1794567 (-) 1140 WP_000063593.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53064.29 Da        Isoelectric Point: 6.9051

>NTDB_id=356792 E5A72_RS08800 WP_049594865.1 1788400..1789821(-) (pilR) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDAAENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPSKQLTEAAKTYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFVSATQN
IQTTVAAPQVVKKLPSEGLERYLENIEKDILINALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=356792 E5A72_RS08800 WP_049594865.1 1788400..1789821(-) (pilR) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGATGCGTGTT
TAACCGACTTAAACCTACCCGATGGGAGTGGGTTAGACTTAGTCAAACATGTCTCTCAAAATTATCCCAACACTCCCATT
GCCGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCATGATGCTGCCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATCTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCGATTAATTGCGGTGCTATTCCAACCGAACTGATGGAAAGTGAGTTGTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAGCAAGGTCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGATTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCATGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCATCTAAACAATTAACAGAAGCGGCCAAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGACG
CCACCATAGATATATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTCTAATCCTTTTGTTTCGGCTACTCAAAAC
ATACAAACCACTGTGGCGGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTAATCAATGCCCTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGATTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M4U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.097

100

0.981
  pilR Pseudomonas aeruginosa PAK

51.198

97.04

0.497

Multiple sequence alignment