Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   E5A72_RS05075 Genome accession   NZ_CP039025
Coordinates   1038544..1039017 (-) Length   157 a.a.
NCBI ID   WP_001214058.1    Uniprot ID   A0A1E3M9I3
Organism   Acinetobacter baumannii ATCC 17978 substr. PMR-High     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1033544..1044017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5A72_RS05060 (E5A72_05060) pilX 1036173..1036991 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E5A72_RS05065 (E5A72_05065) pilW 1036988..1037989 (-) 1002 WP_000079196.1 PilW family protein Machinery gene
  E5A72_RS05070 (E5A72_05070) pilV 1037990..1038550 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  E5A72_RS05075 (E5A72_05075) fimU 1038544..1039017 (-) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  E5A72_RS05080 (E5A72_05080) ispH 1039187..1040137 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E5A72_RS05085 (E5A72_05085) gmk 1040260..1040889 (+) 630 WP_000015937.1 guanylate kinase -
  E5A72_RS05090 (E5A72_05090) rpoZ 1040962..1041240 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  E5A72_RS05095 (E5A72_05095) - 1041279..1041409 (+) 131 Protein_941 hypothetical protein -
  E5A72_RS05100 (E5A72_05100) - 1041449..1043518 (+) 2070 WP_171491426.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.45 Da        Isoelectric Point: 9.3085

>NTDB_id=356781 E5A72_RS05075 WP_001214058.1 1038544..1039017(-) (fimU) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPS
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=356781 E5A72_RS05075 WP_001214058.1 1038544..1039017(-) (fimU) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCTCT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M9I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment