Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   E5A72_RS05060 Genome accession   NZ_CP039025
Coordinates   1036173..1036991 (-) Length   272 a.a.
NCBI ID   WP_000149378.1    Uniprot ID   -
Organism   Acinetobacter baumannii ATCC 17978 substr. PMR-High     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1031173..1041991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5A72_RS05045 (E5A72_05045) pilE 1031390..1031815 (-) 426 WP_000788346.1 type IV pilin protein Machinery gene
  E5A72_RS05050 (E5A72_05050) pilY2 1031812..1032294 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  E5A72_RS05055 (E5A72_05055) pilY1 1032307..1036161 (-) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  E5A72_RS05060 (E5A72_05060) pilX 1036173..1036991 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E5A72_RS05065 (E5A72_05065) pilW 1036988..1037989 (-) 1002 WP_000079196.1 PilW family protein Machinery gene
  E5A72_RS05070 (E5A72_05070) pilV 1037990..1038550 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  E5A72_RS05075 (E5A72_05075) fimU 1038544..1039017 (-) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  E5A72_RS05080 (E5A72_05080) ispH 1039187..1040137 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E5A72_RS05085 (E5A72_05085) gmk 1040260..1040889 (+) 630 WP_000015937.1 guanylate kinase -
  E5A72_RS05090 (E5A72_05090) rpoZ 1040962..1041240 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  E5A72_RS05095 (E5A72_05095) - 1041279..1041409 (+) 131 Protein_941 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28862.69 Da        Isoelectric Point: 5.6905

>NTDB_id=356778 E5A72_RS05060 WP_000149378.1 1036173..1036991(-) (pilX) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMTDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=356778 E5A72_RS05060 WP_000149378.1 1036173..1036991(-) (pilX) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGACTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment