Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GQS52_RS07225 Genome accession   NZ_CP046907
Coordinates   1669396..1671666 (-) Length   756 a.a.
NCBI ID   WP_182312498.1    Uniprot ID   -
Organism   Streptomyces sp. SCUT-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1664396..1676666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS52_RS07195 (GQS52_07195) rnc 1664957..1665747 (-) 791 Protein_1469 ribonuclease III -
  GQS52_RS07200 (GQS52_07200) rpmF 1665767..1665940 (-) 174 WP_065965136.1 50S ribosomal protein L32 -
  GQS52_RS07205 (GQS52_07205) - 1665943..1666542 (-) 600 WP_259370637.1 YceD family protein -
  GQS52_RS07210 (GQS52_07210) - 1666713..1667972 (-) 1260 WP_182312492.1 cell division initiation protein -
  GQS52_RS07215 (GQS52_07215) coaD 1668114..1668593 (-) 480 WP_220472746.1 pantetheine-phosphate adenylyltransferase -
  GQS52_RS07220 (GQS52_07220) rsmD 1668620..1669399 (-) 780 WP_259371060.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GQS52_RS07225 (GQS52_07225) recG 1669396..1671666 (-) 2271 WP_182312498.1 ATP-dependent DNA helicase RecG Machinery gene
  GQS52_RS07230 (GQS52_07230) - 1671716..1673407 (-) 1692 WP_182312500.1 DAK2 domain-containing protein -
  GQS52_RS07235 (GQS52_07235) rpmB 1673685..1673870 (+) 186 WP_014628431.1 50S ribosomal protein L28 -
  GQS52_RS07240 (GQS52_07240) thiD 1674025..1674837 (-) 813 WP_182312501.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GQS52_RS07245 (GQS52_07245) - 1674848..1675804 (-) 957 WP_182312502.1 thiamine-phosphate kinase -
  GQS52_RS07250 (GQS52_07250) - 1675969..1676202 (+) 234 WP_182312503.1 Lrp/AsnC ligand binding domain-containing protein -

Sequence

Protein


Download         Length: 756 a.a.        Molecular weight: 81174.36 Da        Isoelectric Point: 6.0798

>NTDB_id=356701 GQS52_RS07225 WP_182312498.1 1669396..1671666(-) (recG) [Streptomyces sp. SCUT-3]
MDGVAALDEPLRKTVGDRTAKVFADALDLHTAGDLLHHYPRRYAERGELTRLSELPVDEHVTVVARVARAELKRYNQGRG
VRLEVLVTDGSGHLTLVFFSRAAHMHHKALVPGRRGMFAGKVTVFNRTRQLAHPEYALLDGEPGEDAAEEFAGRLLPIYP
ASAKLPTWKIAKAVDTLLDSLQATGWEGVTDPLPPALRDGRGLVALPEALTKVHRPRTKADVADARERLKWDEAFVLQAE
LARRRLADSALPAVPRPRTAGGLLDAFDARLPFTLTEGQEKVSAEIFADLAREHPMHRLLQGEVGSGKTMVGLRAMLAVV
DTGGQAAMLAPTEVLAQQHHRSITAMMGDLAEGGMLGGAERATKVVLLTGSMGAAARRRALLDLATGEAGIVVGTHALIE
DVVRFHDLGLVVVDEQHRFGVEQRDALRAKAAQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAK
DKPHFLARAWDRVREEVEGGHQAYVVCPRIGDEQDEKEQRGGARGRSAAGPGGDGPDGDGPDGDGPDGGEERRPPLAVLE
TADRLAAGPLAGLRVEVLHGRMQPDAKDDVMRRFSDGEVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRV
GRGSAPGLCLLVSDMPEGTPARTRLDAVAATLDGFELSRIDLEQRREGDVLGQAQSGARSSLRMLAVMDDEEVIAAARHE
AAALVAADPELAAHPELRSALDSLLDARRAEYLDKG

Nucleotide


Download         Length: 2271 bp        

>NTDB_id=356701 GQS52_RS07225 WP_182312498.1 1669396..1671666(-) (recG) [Streptomyces sp. SCUT-3]
ATGGACGGCGTGGCTGCCCTGGACGAACCGCTGCGCAAGACGGTCGGCGACCGCACCGCCAAGGTGTTCGCCGACGCCCT
CGACCTGCACACCGCGGGGGACCTGCTGCACCACTACCCGCGCCGCTACGCCGAGCGCGGGGAGCTGACCCGGCTCTCCG
AGCTGCCCGTCGACGAGCACGTCACCGTCGTCGCCCGCGTCGCCAGGGCCGAGCTCAAGCGCTACAACCAGGGCAGGGGC
GTGCGGCTGGAGGTGCTCGTCACCGACGGCAGCGGGCACCTGACCCTGGTCTTCTTCAGCCGGGCCGCCCACATGCACCA
CAAGGCCCTCGTCCCCGGCCGGCGCGGCATGTTCGCCGGCAAGGTGACGGTGTTCAACCGCACCCGCCAGCTCGCCCACC
CCGAGTACGCCCTGCTGGACGGCGAGCCGGGGGAGGACGCCGCGGAGGAGTTCGCCGGCCGGCTCCTGCCGATCTACCCG
GCCTCGGCCAAACTGCCCACCTGGAAGATCGCCAAGGCCGTCGACACCCTCCTGGACTCCCTCCAGGCCACCGGCTGGGA
GGGCGTCACCGACCCGCTGCCGCCCGCGCTGCGCGACGGGCGCGGCCTGGTCGCGCTCCCCGAGGCGCTGACCAAGGTCC
ACCGCCCGCGCACGAAGGCGGACGTGGCCGACGCCCGCGAACGCCTCAAGTGGGACGAGGCGTTCGTCCTCCAGGCCGAA
CTGGCCCGCCGCCGCCTCGCCGACTCCGCCCTCCCCGCCGTGCCCCGCCCCCGCACGGCCGGCGGGCTGCTGGACGCGTT
CGACGCGCGCCTGCCGTTCACCCTCACCGAGGGCCAGGAGAAGGTCTCCGCGGAGATCTTCGCCGACCTGGCGCGCGAAC
ACCCCATGCACCGGCTCCTGCAGGGCGAGGTCGGCTCGGGCAAGACGATGGTGGGGCTGCGGGCCATGCTCGCCGTCGTC
GACACCGGCGGGCAGGCCGCGATGCTCGCGCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCCATCACCGCGATGAT
GGGCGACCTGGCGGAGGGGGGCATGCTCGGCGGGGCGGAGAGGGCCACCAAGGTCGTGCTGCTGACCGGCTCCATGGGGG
CCGCCGCCCGCCGGCGGGCGCTGCTGGACCTGGCCACCGGCGAGGCGGGCATCGTCGTCGGCACCCACGCCCTGATCGAG
GACGTGGTGCGCTTCCACGACCTGGGACTGGTCGTCGTGGACGAGCAGCACCGCTTCGGGGTGGAGCAGCGCGACGCCCT
GCGCGCCAAGGCCGCGCAGCCCCCGCACCTGCTGGTGATGACCGCCACCCCCATCCCGCGCACGGTGGCGATGACGGTCT
TCGGCGACCTGGAGACCTCGGTGCTGGACCAGCTCCCCGCCGGCCGCTCGCCCATCGCCACGCACGTGGTCCCCGCCAAG
GACAAGCCGCACTTCCTGGCGCGCGCCTGGGACCGGGTCCGCGAGGAGGTCGAGGGCGGCCACCAGGCCTACGTGGTCTG
CCCGCGCATCGGCGACGAGCAGGACGAGAAGGAGCAGCGCGGCGGGGCGCGGGGGAGGAGCGCGGCAGGCCCCGGCGGCG
ACGGTCCCGACGGGGACGGCCCCGACGGCGACGGCCCGGACGGCGGGGAGGAGCGCCGCCCGCCCCTGGCCGTCCTGGAG
ACGGCGGACAGGCTCGCCGCCGGCCCGCTGGCCGGCCTGCGGGTGGAGGTGCTGCACGGCCGCATGCAGCCCGACGCCAA
GGACGACGTGATGCGCCGCTTCTCCGACGGCGAGGTCGACGTCCTGGTCGCCACCACCGTCATCGAGGTCGGCGTCAACG
TGCCCAACGCCACGGCGATGGTGATCATGGACGCCGACCGGTTCGGCGTCTCCCAGCTGCACCAGCTCCGCGGCCGCGTC
GGCCGCGGATCGGCGCCCGGACTGTGCCTGCTCGTCAGCGACATGCCCGAGGGCACCCCCGCCCGCACCCGCCTGGACGC
GGTCGCGGCCACCCTGGACGGCTTCGAACTCTCCCGCATCGACCTCGAGCAGCGCCGCGAGGGCGACGTGCTCGGCCAGG
CCCAGTCCGGGGCCCGCTCCTCGCTGCGCATGCTCGCCGTCATGGACGACGAGGAGGTCATCGCCGCCGCCCGCCACGAG
GCGGCCGCGCTGGTCGCCGCCGACCCGGAGCTGGCCGCACACCCGGAGCTGCGCAGCGCCCTGGACAGCCTGCTCGACGC
CCGGCGCGCGGAGTACCTGGACAAGGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(671-733)

DEAD/DEAH box helicase (DEAD)

(297-449)

Helicase conserved C-terminal domain (Helicase_C)

(572-643)

RecG wedge domain (RecG_wedge)

(13-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

37.297

97.884

0.365
  recG Neisseria meningitidis strain C311

37.33

97.09

0.362