Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GQS52_RS00910 Genome accession   NZ_CP046907
Coordinates   193136..193741 (+) Length   201 a.a.
NCBI ID   WP_182311203.1    Uniprot ID   -
Organism   Streptomyces sp. SCUT-3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 188136..198741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS52_RS00880 (GQS52_00865) - 188455..189435 (+) 981 WP_182316134.1 cytochrome c oxidase assembly protein -
  GQS52_RS00885 - 189564..189722 (+) 159 WP_182311200.1 hypothetical protein -
  GQS52_RS00890 (GQS52_00870) - 189768..190187 (-) 420 WP_182311201.1 SSI family serine proteinase inhibitor -
  GQS52_RS00895 (GQS52_00875) - 190470..191617 (-) 1148 Protein_186 phospholipase D-like domain-containing protein -
  GQS52_RS00900 (GQS52_00880) - 191921..192634 (+) 714 WP_182316135.1 PIG-L deacetylase family protein -
  GQS52_RS00905 (GQS52_00885) - 192722..193051 (-) 330 WP_182311202.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  GQS52_RS00910 (GQS52_00890) clpP 193136..193741 (+) 606 WP_182311203.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GQS52_RS00915 (GQS52_00895) - 193748..194053 (+) 306 WP_182311204.1 hypothetical protein -
  GQS52_RS00920 (GQS52_00900) - 194528..195010 (+) 483 WP_182311205.1 C40 family peptidase -
  GQS52_RS00925 (GQS52_00905) - 195057..195491 (-) 435 WP_182311206.1 ATP-binding protein -
  GQS52_RS00930 (GQS52_00910) - 195724..196872 (-) 1149 WP_182311207.1 8-amino-7-oxononanoate synthase -
  GQS52_RS00935 (GQS52_00915) bioB 197024..198262 (+) 1239 WP_182311208.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21574.74 Da        Isoelectric Point: 6.8422

>NTDB_id=356691 GQS52_RS00910 WP_182311203.1 193136..193741(+) (clpP) [Streptomyces sp. SCUT-3]
MQRPAARHVLPQFTERTPQGVRTLDPYSKLLEERIVVLGTVVDDTAANDVMAQLIHLEGAAPERDVSLYINSPGGSLTAM
TAILDTMQFVSCDVATVCIGQAASAAAVLLAAGAPGKRLATPGSRVLIHQPSLAEPVRGTAEELRIHAGEIARQARMLED
LLVRHTGGSRERVRAALERDTVLDAQEALRHGLVDHVVSKR

Nucleotide


Download         Length: 606 bp        

>NTDB_id=356691 GQS52_RS00910 WP_182311203.1 193136..193741(+) (clpP) [Streptomyces sp. SCUT-3]
ATGCAGCGCCCTGCCGCCCGCCACGTCCTGCCGCAGTTCACCGAGCGCACCCCGCAGGGGGTGCGCACCCTCGACCCGTA
CTCCAAGCTCCTGGAGGAGCGCATCGTCGTCCTGGGGACGGTCGTCGACGACACCGCCGCCAACGACGTCATGGCGCAGC
TGATCCACCTGGAGGGGGCCGCGCCGGAGCGCGACGTCTCCCTGTACATCAACTCCCCCGGCGGCTCGCTGACCGCGATG
ACCGCGATCCTCGACACCATGCAGTTCGTCTCCTGCGACGTCGCCACCGTCTGCATCGGCCAGGCCGCCTCGGCCGCCGC
CGTGCTGCTCGCCGCCGGGGCACCGGGCAAGCGCCTGGCCACTCCCGGGTCGCGGGTGCTGATCCACCAGCCCTCCCTGG
CCGAACCGGTCCGGGGGACGGCCGAGGAGCTGAGGATCCACGCCGGGGAGATCGCGCGGCAGGCGCGGATGCTGGAGGAC
CTGCTGGTGCGTCACACCGGCGGGAGCCGCGAGCGGGTGCGTGCCGCCCTGGAGCGGGACACCGTGCTGGACGCGCAGGA
AGCACTGCGCCACGGGCTGGTCGACCACGTCGTCTCGAAGCGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

45.312

95.522

0.433
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

43.75

95.522

0.418
  clpP Streptococcus pneumoniae Rx1

38.342

96.02

0.368
  clpP Streptococcus pneumoniae D39

38.342

96.02

0.368
  clpP Streptococcus pneumoniae R6

38.342

96.02

0.368
  clpP Streptococcus pneumoniae TIGR4

38.342

96.02

0.368