Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   VEA_RS16480 Genome accession   NC_013457
Coordinates   309989..312034 (-) Length   681 a.a.
NCBI ID   WP_006742321.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 304989..317034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS24480 (VEA_000285) - 305433..305582 (-) 150 WP_006742318.1 hypothetical protein -
  VEA_RS16465 (VEA_000286) - 305587..306741 (-) 1155 WP_006742319.1 EAL domain-containing response regulator -
  VEA_RS16470 (VEA_000287) ylqF 307420..308364 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  VEA_RS16475 (VEA_000288) cqsA 308704..309885 (+) 1182 WP_006742320.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VEA_RS16480 (VEA_000289) cqsS 309989..312034 (-) 2046 WP_006742321.1 response regulator Regulator
  VEA_RS16485 (VEA_000290) - 312402..313019 (+) 618 WP_006742322.1 HAD family phosphatase -
  VEA_RS16490 (VEA_000291) - 313106..313654 (-) 549 WP_005398196.1 GNAT family N-acetyltransferase -
  VEA_RS16495 (VEA_000292) - 313927..315051 (+) 1125 WP_006742323.1 fatty acid desaturase -
  VEA_RS16500 (VEA_000293) dcuC 315407..316774 (+) 1368 WP_005398199.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78038.49 Da        Isoelectric Point: 5.3911

>NTDB_id=35661 VEA_RS16480 WP_006742321.1 309989..312034(-) (cqsS) [Vibrio antiquarius]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWDFVFPQAYENLPLRLFCSLLFFGIIFRNRLSSTWRKYIHIYYQVTIT
ICLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPSKKEAEKDQYLMSGEDVTLLREVSEDAMN
IIQSGNETIDLLLTSIDENRVSRSSFQKHSAHSVVEKAIESFSYKRATDRFAISLDARSEFDFLGSDTLLKYVMYNLFKN
AFHHRTSEDFHIHVSMTSTEHSNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPPITSDIVTEIKNDLTKLKTILTVTNQDILVSKVTDISRFMGFESTILDVNQVLKKKEYEFEFDLIFIDLE
SLDARANQLDRLESLLSFTEARIVYLFEHHPTQRACKAAYEPIWVETQAWLLNTKPTIDRLLYDSSYVSTPTASVALDTS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQENVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=35661 VEA_RS16480 WP_006742321.1 309989..312034(-) (cqsS) [Vibrio antiquarius]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCCAACCTGACTCTCGTTGGTTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTTTGGGATTTTGTTTTCCCACAGGCTTATGAAAACTTGCCGCTCAGATTGTTTTGTTCACTATTGT
TCTTTGGCATCATTTTTAGAAATCGCCTGTCGTCAACGTGGCGAAAATATATCCATATTTACTACCAAGTGACGATAACG
ATTTGCTTACCGTTTTTCTTTTTCTATATGTTACTGATGAATGACTGGTCCAATGTTTGGGTCATGTCTTTTATGTCCGC
GATTTTCTTGCACATTCTATTGGTTCATGTCACAAGAGTTATGTTCGCTCAAACTTTTGCCGGAATAGGTTTAGCGACGT
TCTTTGCTTGGGTGGCGAAAGGGTTTCATCTCGATTTAACAATGGACTGGACGCATGTGCCAATCTTTCTCTTTATTTAT
GTATTTGGCAATTTATTCTACTTTCGGAACCAAGTAGAGCACGAAGCGAAAGTGTCGTTGGCCAAGTCATTCGGGGCCGG
AATTGCGCATGAAATGCGTAACCCTTTAAGTGGCCTTTGCACGTCAATCGATGTTATCCAATCAGTCTTACCCAGTAAAA
AAGAAGCCGAGAAAGACCAATATCTGATGAGCGGAGAGGATGTCACCCTGCTGCGCGAAGTTAGTGAGGATGCGATGAAC
ATCATCCAGTCGGGCAACGAGACGATAGATTTACTTTTGACATCGATAGACGAAAACCGTGTCTCGCGATCCAGTTTCCA
AAAGCATTCTGCTCACTCAGTGGTTGAAAAAGCGATTGAAAGCTTTAGTTATAAGCGTGCGACGGATCGCTTTGCTATAT
CCCTAGATGCGAGAAGTGAGTTTGATTTTCTTGGTAGCGATACCTTACTCAAATACGTTATGTATAACCTTTTCAAGAAC
GCCTTCCATCATCGCACATCTGAAGATTTCCACATACATGTCTCCATGACGAGTACGGAGCACTCAAACCAAATCGTTGT
AACCGATAATGGTGCAGGCATTGCTCCTGATGTCCTACGTAATATATTTCAGGACTTTTACACAACTGGTAAGTCAGGCA
GCTATGGTTTGGGTTTGCCATTTTGTAAAAAAGTGATGCGTTCTTTTGGAGGTAACATTGAATGCCAGTCTCAGCTAGGT
GAGTGGTCTCAGTTCACGTTAACTTTCCCGCCGATCACATCTGATATCGTGACTGAAATTAAAAACGATTTGACCAAACT
CAAAACCATCCTAACGGTGACTAATCAAGATATTCTTGTGTCGAAAGTGACGGACATTAGCCGTTTTATGGGTTTTGAAT
CAACGATCTTAGATGTTAATCAAGTGCTCAAAAAGAAAGAGTATGAGTTCGAATTCGACCTGATTTTTATCGATCTTGAG
AGCTTGGATGCAAGAGCAAACCAATTGGATAGATTAGAATCTCTTTTGTCTTTCACGGAAGCTCGTATCGTTTATCTTTT
TGAGCATCACCCGACACAGAGAGCATGCAAAGCGGCATATGAGCCTATTTGGGTCGAGACTCAAGCCTGGTTATTGAATA
CTAAGCCAACCATTGACCGTCTCTTGTATGATTCAAGCTATGTATCGACACCAACGGCCTCAGTGGCTTTGGATACGTCA
AATAAGCGGACAATTATGGTCGTGGATGATAACGAATCTTTGCGAAAATTTACCGCGATGTTACTCGAAAAGCAGGGCTT
TGAAGTGATTCAGAAAGAAGACGGGCAGCAAGCACTGGATACATTAGAGCAAGAGAACGTTGACCTCATTCTTATGGATA
TCGAGATGCCCATCATGGATGGTGTAGAAGCTTCAAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCGCATACTGGGGATAGCTCACCTGTTACGCTGGACAAAATAGGCTCTTCTGGCATGTCTGACTTTATCGTGAAACC
AGCGGATAAAAATCGCTTATTCGACAAAATCGCAAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(565-677)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.489

100

0.498

Multiple sequence alignment