Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VEA_RS16475 Genome accession   NC_013457
Coordinates   308704..309885 (+) Length   393 a.a.
NCBI ID   WP_006742320.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 303704..314885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS16455 (VEA_000284) - 304065..305426 (-) 1362 WP_006742317.1 GGDEF domain-containing protein -
  VEA_RS24480 (VEA_000285) - 305433..305582 (-) 150 WP_006742318.1 hypothetical protein -
  VEA_RS16465 (VEA_000286) - 305587..306741 (-) 1155 WP_006742319.1 EAL domain-containing response regulator -
  VEA_RS16470 (VEA_000287) ylqF 307420..308364 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  VEA_RS16475 (VEA_000288) cqsA 308704..309885 (+) 1182 WP_006742320.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VEA_RS16480 (VEA_000289) cqsS 309989..312034 (-) 2046 WP_006742321.1 response regulator Regulator
  VEA_RS16485 (VEA_000290) - 312402..313019 (+) 618 WP_006742322.1 HAD family phosphatase -
  VEA_RS16490 (VEA_000291) - 313106..313654 (-) 549 WP_005398196.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43675.96 Da        Isoelectric Point: 6.2260

>NTDB_id=35660 VEA_RS16475 WP_006742320.1 308704..309885(+) (cqsA) [Vibrio antiquarius]
MSETIQSKPLPSFIEERLDFHIQDLIEPNENKKHLVLGKRPPCNAVVMQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTN
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIKKADDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVFGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLSACQEAFVHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=35660 VEA_RS16475 WP_006742320.1 308704..309885(+) (cqsA) [Vibrio antiquarius]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTTCCTTTATTGAGGAACGCCTAGATTTTCATATTCAAGATCTAATTGA
ACCGAACGAGAACAAGAAACACCTTGTTCTTGGTAAACGTCCACCATGTAATGCCGTTGTTATGCAAAGCAATGATTACC
TGGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCTCAACACGATGACAACGTCGTGATGTCC
GCAATTTTCTTGCAAGATGATGAGTCGAAACCTGCATTTGAAACTCAACTAGCCAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCGGGATGGGCTGCGAATGTCGGTTTATTACAAACTATTTGTGCACCGAACATACCTGTGTATATCGACT
TCTTTGCGCATATGTCTTTATGGGAAGGTGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAAC
CACTTGCGAAAACAGATTTCACGCCATGGTTCGGGGATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAAGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTCCGCAAGGCGCTGGGCTACTGCAAGAGCTGGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGTGCAGAAAAGCTGGCTAAGACGCTTCCATTTGTCGCGTATCCTGCCAT
TTTCAGCTCCACCGTGTTACCGCAAGAAATTATTCGGTTAGAAAAAACACTGGACGTCATAAAAAAAGCCGATGACAAGC
GGGAGATTTTGTTTAAAAGAGCGAAGTCTCTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTCTAGAAGAAAGGAATGTCTTTGGTGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGATCACGTTCTTTCCGCCTGCCAAGAAGCGTTTGTTCATCCCGATCTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment