Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VEA_RS10770 Genome accession   NC_013456
Coordinates   2304839..2306260 (+) Length   473 a.a.
NCBI ID   WP_006741652.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2299839..2311260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS10750 (VEA_003692) - 2300321..2301127 (-) 807 WP_006741648.1 adenosylcobinamide-GDP ribazoletransferase -
  VEA_RS10755 (VEA_003693) cobT 2301127..2302170 (-) 1044 WP_006741649.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VEA_RS10760 (VEA_003694) - 2302419..2303108 (+) 690 WP_006741650.1 NAD(P)H-binding protein -
  VEA_RS10765 (VEA_003695) - 2303309..2304682 (+) 1374 WP_006741651.1 L-cystine transporter -
  VEA_RS10770 (VEA_003696) sbcB 2304839..2306260 (+) 1422 WP_006741652.1 exodeoxyribonuclease I Machinery gene
  VEA_RS10775 (VEA_003697) - 2306316..2306690 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  VEA_RS10780 (VEA_003698) - 2306692..2307369 (+) 678 WP_005377888.1 LrgB family protein -
  VEA_RS10785 (VEA_003699) cdd 2307813..2308700 (+) 888 WP_005397788.1 cytidine deaminase -
  VEA_RS10790 (VEA_003700) purT 2308846..2310021 (+) 1176 WP_006741653.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  VEA_RS10795 (VEA_003701) - 2310093..2310743 (-) 651 WP_041853041.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54402.61 Da        Isoelectric Point: 4.8658

>NTDB_id=35649 VEA_RS10770 WP_006741652.1 2304839..2306260(+) (sbcB) [Vibrio antiquarius]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNVIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=35649 VEA_RS10770 WP_006741652.1 2304839..2306260(+) (sbcB) [Vibrio antiquarius]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATGTCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACTACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGCTGGG
ATTTACTCGATGTGCTACGCGCATGCCACGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGATTGC
GACTATCGAAATGGCGAAAAAAGTCAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAACAACGCGGTTATCACTATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGTTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACGCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment