Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VEA_RS09955 Genome accession   NC_013456
Coordinates   2118207..2119730 (+) Length   507 a.a.
NCBI ID   WP_006742940.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2113207..2124730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS09930 (VEA_003528) - 2113540..2113860 (+) 321 WP_005394270.1 STAS domain-containing protein -
  VEA_RS09935 (VEA_003529) - 2113887..2114753 (+) 867 WP_006742937.1 OmpA family protein -
  VEA_RS09940 (VEA_003530) - 2114750..2116852 (+) 2103 WP_006742938.1 SLBB domain-containing protein -
  VEA_RS09945 (VEA_003531) - 2116852..2117538 (+) 687 WP_006742939.1 AAA family ATPase -
  VEA_RS09950 (VEA_003532) - 2117550..2117930 (+) 381 WP_012841848.1 Hpt domain-containing protein -
  VEA_RS09955 (VEA_003533) luxO 2118207..2119730 (+) 1524 WP_006742940.1 sigma-54 dependent transcriptional regulator Regulator
  VEA_RS09960 (VEA_003534) - 2119705..2120775 (+) 1071 WP_006742941.1 glycosyltransferase family 4 protein -
  VEA_RS09965 (VEA_003535) - 2120931..2122115 (+) 1185 WP_006742942.1 glycosyltransferase -
  VEA_RS09970 (VEA_003536) - 2122127..2123299 (+) 1173 WP_006742943.1 glycosyltransferase family 4 protein -
  VEA_RS09975 (VEA_003537) - 2123292..2124722 (+) 1431 WP_006742944.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 56798.65 Da        Isoelectric Point: 6.1651

>NTDB_id=35648 VEA_RS09955 WP_006742940.1 2118207..2119730(+) (luxO) [Vibrio antiquarius]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTLNHLPAQLTRKSKTARTSTPA
HVTQEPATPPTITSRPVYVEEQSASAREPSIPTPEPNIQSSAAASPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNAA
VMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=35648 VEA_RS09955 WP_006742940.1 2118207..2119730(+) (luxO) [Vibrio antiquarius]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACTTCATTAGCCATACTTTATAAGCAGTATGTCAAAGACGAACCTTA
TGACATTTTTCATGTCGAAACAGGTCGCGAAGCAATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGATATGTCTGGTGAAGACGTGTTGGATTGGATCAACCAGAATGACATTCCTACCTCCGTTATTATTGCT
ACAGCGCATGGCAGCGTAGACTTAGCCGTTAACCTAATTCAAAAAGGCGCGGAAGATTTCTTAGAAAAACCTATTAACGC
TGATCGCCTAAAAACTTCTGTTGCATTGCACCTCAAACGCGCCAAACTGGAAGATTTAGTAGAAAACATTCAGTCCAAGT
TTGATCGCCATAACTATCACGGATTTATCGGTTCAAGTCTCCCAATGCAGGCGGTATATAAAACCATTGATGCCGTTGCT
CCAACATCTGCCAGTGTCTTTATTGTGGGTGAAAGCGGCACAGGTAAAGAAGTCTGTGCTGAAGCCGTGCACCGTCAGAG
CGATCGTAAAGACAAGCCTTTTATTGCTATTAACTGCGGGGCCATCCCCCGAGATTTAATGGAAAGTGAGATTTTTGGCC
ACGTTAAAGGCGCATTTACCGGAGCCACAACAGACCGAAAAGGTGCTGCGACGCTGGCTCACGGTGGAACGCTTTTTCTC
GATGAACTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTTCAAACAGGAACCTACACACCGCTTGG
TGGCACTCGAGAGATGAAGGTGGATGTCCGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTGGAAGAAGGTC
GTTTTCGTGAAGATTTGTATTACCGCGTACACGTAATACCTATCGATATGCCCCCCCTACGTGAGCGAGGAAGTGACATC
GTCACGTTAGCCAAGCACTTTTTGACCACTTATGCTAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCACTACGAATGGCCGGGTAATGTAAGGCAATTGCAAAACATCATACGTAACATTGTGGTGCTTAATA
ATGACGAAAAAGTCACGCTGAATCACCTACCCGCTCAACTGACTAGAAAGTCTAAAACAGCGAGAACATCCACCCCCGCA
CATGTAACTCAAGAGCCAGCAACCCCTCCAACAATAACATCCCGACCAGTGTATGTTGAGGAACAATCGGCCTCCGCTAG
AGAACCGTCAATACCGACACCGGAACCTAACATACAATCCTCAGCGGCTGCCTCGCCGTACTTTAACTCTGATGGAACCA
TTCGCCCTATGTGGCAAGTGGAGCGTGAGGCGATTCAAAACGCAATCGCATACTGTGATGGCAACGTACTCAATGCCGCC
GTAATGCTGGAGCTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACAATC
TTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(457-493)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.239

0.485

Multiple sequence alignment