Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   LL3_RS05575 Genome accession   NC_017190
Coordinates   1095088..1098480 (+) Length   1130 a.a.
NCBI ID   WP_014471680.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LL3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1090088..1103480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS05565 (LL3_01149) addA 1090148..1093852 (+) 3705 WP_014471678.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  LL3_RS05570 (LL3_01150) sbcD 1093919..1095091 (+) 1173 WP_014471679.1 exonuclease subunit SbcD -
  LL3_RS05575 (LL3_01151) sbcC 1095088..1098480 (+) 3393 WP_014471680.1 exonuclease subunit SbcC Machinery gene
  LL3_RS05580 (LL3_01152) - 1098496..1098795 (+) 300 WP_013351764.1 hypothetical protein -
  LL3_RS05585 (LL3_01153) - 1098836..1099054 (-) 219 WP_013351765.1 spore germination protein -
  LL3_RS05590 (LL3_01154) - 1099094..1099489 (-) 396 WP_014470012.1 spore germination protein GerPE -
  LL3_RS05595 (LL3_01155) - 1099489..1099665 (-) 177 WP_013351767.1 hypothetical protein -
  LL3_RS05600 (LL3_01156) - 1099662..1100282 (-) 621 WP_013351768.1 spore germination protein GerPC -
  LL3_RS05605 (LL3_01157) - 1100317..1100550 (-) 234 WP_014470013.1 spore germination protein GerPB -
  LL3_RS05610 (LL3_01158) - 1100563..1100784 (-) 222 WP_003155135.1 spore germination protein -
  LL3_RS21940 - 1101081..1101194 (-) 114 Protein_1096 aspartyl-phosphate phosphatase Spo0E family protein -
  LL3_RS05620 (LL3_01162) - 1101411..1102316 (+) 906 WP_013351771.1 fumarylacetoacetate hydrolase family protein -
  LL3_RS05625 (LL3_01163) - 1102411..1102767 (+) 357 WP_013351772.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128348.51 Da        Isoelectric Point: 5.5159

>NTDB_id=35648 LL3_RS05575 WP_014471680.1 1095088..1098480(+) (sbcC) [Bacillus amyloliquefaciens LL3]
MKPILLTIKGLHSFREEQTIDFDGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKEEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKLAEQQFHEANERLEAAEKKRVQAK
ERFENHQEIWNLQTERNEYEVRQEKLEEKRPYITDLTDRLKEAETALALEPYADRYTEAVRRKERAEKEHELAKRKLEAE
TASFTRQNEAYEAWRIHKAEQEPKLVKEEELYQRLSAIEQKLLEAKKEAEKTKAEHGKKEEEYEAASKQLTAVKDRLTRG
QNRQNELKEELKVVQVTADERKKCQTAAQLAAGFQQTQEQIKKERVNLTAQLKNMEKLNGESEALSAKAKSEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKTQTDLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRSRSAHETYSPDTA
VQERLQQVEALLSEAAALSQEVLTVKVALEEQSGRFTEECPFLQNARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISTYQKTVKQAEQLGERIRYEEKEAERLKHSLEELESLSESRLNQYNEACGDIPLNRIDAWQASIDEKDR
QAEEFEKRIETSIAFLKEHEDEKERLQEKKHQLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLDAVRQELQL
LKSKEQSLFDALQQAQQSLNDAKGRESGSLMSLRDAESALEKAQNDWYGKSKDTGFAEPDQVKKSLLPKERAEEMKREID
EFLDSSKQLSANIRRVTDKLAGRRVTEEEWTASVSLLEQAEAESGAAKEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTMEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=35648 LL3_RS05575 WP_014471680.1 1095088..1098480(+) (sbcC) [Bacillus amyloliquefaciens LL3]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGAGAGGAACAGACCATTGACTTTGACGGACTGTCCGG
TGCCGGGGTGTTCGGAATTTTCGGCCCGACGGGAAGCGGAAAGTCGTCGATCCTTGATGCGATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATTCTGAACCATGCCGAAGATCAGCTCGCCGTCTCTTTTACATTC
GCGCTTCAATCCGGCCACAGGGTGTCCTACAAAGTAGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTGAAAACCGC
CCTTTGCCGCTTGATTGAAATCAAAGAGGAACAAACCGTGCTTGCCGATAAAGCGAATGAAGTGAACAAAAAGGTGGAAG
AGCTTCTTGGTCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTCCCGCAAGGAAAGTTTGCCGAGTTTCTGTCACTG
AAAGGCGCGGAAAGAAGACATATGCTGCAGCGCCTTTTTAATCTGGAACAGTACGGTGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCCGCGAAAAAAAATGAGATGCTGGCAGAACAATCCGGCCTCGGAGACGCGGGGGAAGACG
CGCTGAAGCTGGCTGAACAGCAGTTTCATGAAGCGAATGAACGGCTTGAAGCGGCTGAGAAGAAACGGGTCCAAGCAAAA
GAACGTTTTGAGAATCACCAGGAGATTTGGAACTTGCAGACAGAGAGAAACGAATACGAGGTGCGGCAGGAAAAGCTTGA
GGAAAAACGCCCGTATATCACGGATTTGACTGACCGTCTTAAAGAAGCGGAAACTGCTCTCGCTCTTGAACCGTATGCAG
ATCGCTACACGGAAGCCGTCCGCCGGAAGGAGCGCGCCGAGAAGGAGCACGAACTGGCCAAACGGAAATTAGAGGCGGAA
ACCGCTTCATTTACCCGGCAAAATGAAGCCTATGAAGCGTGGCGGATTCATAAGGCTGAACAAGAGCCGAAGCTTGTCAA
GGAAGAAGAGCTGTATCAAAGGCTGTCAGCCATTGAACAAAAGCTGCTTGAAGCAAAAAAAGAAGCGGAAAAAACAAAGG
CGGAGCACGGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGACCGCAGTGAAAGATCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGTAGTTCAAGTGACCGCTGATGAACGGAAAAAATGCCAGACCGC
CGCACAGCTGGCAGCCGGCTTTCAGCAGACACAGGAACAAATCAAGAAAGAACGGGTCAATCTGACAGCCCAGTTGAAAA
ACATGGAGAAGCTGAACGGAGAAAGCGAGGCGCTCAGCGCAAAGGCGAAATCGGAAGAAGAGGACATTACGCGCGCTTAT
CAAACACTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCGGACAAAAC
GCAAACCGACCTGCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCAACGCAGCATGACCGTTCGCGCTCCGCTCATGAAACATATTCGCCCGATACGGCT
GTACAGGAACGTTTGCAGCAGGTTGAAGCGCTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACGGTCAAGGT
TGCATTAGAAGAGCAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAACGCCCGGGTCCCGGAGCTGGAAGCCG
CTTCTTCTATCAGCGGCCGTCCGCTTGATGAAGCGTTCAGCGCCGTCCGCCTGGAGTGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACGAGACTGATCAGTACCTATCAAAAGACGGTGAAACAAGCTGAACAGCTGGGCGAACG
AATCCGCTATGAGGAAAAAGAAGCAGAGCGCCTCAAACATTCATTAGAAGAGCTCGAATCGCTGTCAGAAAGCCGCTTGA
ATCAGTACAATGAAGCCTGCGGGGATATTCCGTTAAACCGGATTGACGCCTGGCAGGCTTCGATAGACGAAAAGGACAGG
CAGGCAGAGGAATTCGAGAAGCGCATTGAAACAAGCATCGCCTTCCTAAAGGAACATGAAGATGAGAAAGAACGGCTGCA
GGAGAAGAAGCATCAGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCAGAGCGCCTGCAGCAGGTCATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCCATTTCTGCAAAGCTTGACGCAGTGCGGCAGGAATTACAGCTC
TTAAAATCGAAAGAACAGTCGTTATTCGATGCGCTGCAGCAGGCTCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGCCTCATGTCACTGCGGGACGCTGAGTCCGCCCTTGAGAAAGCGCAAAATGACTGGTACGGGAAATCAAAAGACA
CCGGGTTTGCCGAGCCGGATCAAGTCAAAAAAAGCCTGCTTCCGAAAGAGCGGGCCGAGGAAATGAAAAGAGAAATTGAT
GAATTTCTGGACAGCTCAAAGCAGCTTTCGGCAAATATCCGCCGTGTCACTGATAAATTAGCCGGCCGCCGGGTAACGGA
AGAAGAATGGACAGCATCGGTTTCTCTGCTGGAGCAGGCAGAGGCTGAGTCAGGCGCCGCCAAGGAGGAAAAAGGAGCTC
AGGCAAAAGCCTTTGCGGTGATGCAGAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAGGAACAGCTGGA
AAGCGTGGCCCGAGACGCCTCTGCACGGCTTGGAGCGCTGACAAGACAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GCTTCGTCATGCGCGATGACGCGAACGGCGGCGTCAAACGCCCCGTATCAAGCCTTTCCGGCGGTGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCTGCCCAGATTCAGCTGCGGGGGCAATATCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACGCTTGACCAAGGGCTTTTAGACACCGTTGTCACAGCGCTGGAAAAGCTGCAATCGGATAATTTGTCCG
TCGGGGTGATCAGCCATGTGCAGGAGCTCAGAGCGCGGCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGA
AAAGGCACCCGGGTCACAATGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.581

100

0.649

Multiple sequence alignment