Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VEA_RS05055 Genome accession   NC_013456
Coordinates   1043654..1044268 (-) Length   204 a.a.
NCBI ID   WP_031780576.1    Uniprot ID   A0A0T7EDM0
Organism   Vibrio antiquarius     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038654..1049268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS05045 (VEA_002551) aceF 1039918..1041813 (+) 1896 WP_006743170.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  VEA_RS05050 (VEA_002552) lpdA 1042081..1043508 (+) 1428 WP_006743169.1 dihydrolipoyl dehydrogenase -
  VEA_RS05055 (VEA_002553) opaR 1043654..1044268 (-) 615 WP_031780576.1 transcriptional regulator OpaR Regulator
  VEA_RS05060 (VEA_002554) hpt 1044587..1045117 (+) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  VEA_RS05065 (VEA_002555) can 1045195..1045863 (-) 669 WP_005379996.1 carbonate dehydratase -
  VEA_RS05070 (VEA_002556) - 1046141..1047811 (+) 1671 WP_012841422.1 SulP family inorganic anion transporter -
  VEA_RS05075 (VEA_002557) - 1048064..1048981 (+) 918 WP_006743166.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23612.89 Da        Isoelectric Point: 6.4042

>NTDB_id=35644 VEA_RS05055 WP_031780576.1 1043654..1044268(-) (opaR) [Vibrio antiquarius]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKSEAELKHLVSSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=35644 VEA_RS05055 WP_031780576.1 1043654..1044268(-) (opaR) [Vibrio antiquarius]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCCCCGATCAAACGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGTCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACCGTTT
TTAACTACTTCCCGACTCGTGAAGACTTAGTGGATGAAGTACTCAACCACGTCGTACGTCAGTTCTCGAACTTCCTATCG
GATAACATTGACTTAGACTTACACGCGCGTGAAAACATCGCCAATATCACTAACGCGATGATTGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTTTGGTTCGAGTGGAGTGCTTCAACACGTGATGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCGATTGAACGCGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACTTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGTGCAAAAAGTGAAGCGGAACTTAA
GCACCTTGTTAGTTCATACTTAGACATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7EDM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment