Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GPY01_RS07690 Genome accession   NZ_CP046839
Coordinates   710084..710728 (-) Length   214 a.a.
NCBI ID   WP_001890391.1    Uniprot ID   Q9KSP3
Organism   Vibrio cholerae strain 2011EL-1271     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 705084..715728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS07650 - 705153..705638 (+) 486 WP_123161385.1 GNAT family N-acetyltransferase -
  GPY01_RS07655 - 705635..706753 (-) 1119 WP_001190450.1 GGDEF domain-containing protein -
  GPY01_RS07680 pgsA 707647..708204 (-) 558 WP_001211977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPY01_RS07685 uvrC 708252..710084 (-) 1833 WP_033839245.1 excinuclease ABC subunit UvrC -
  GPY01_RS07690 letA 710084..710728 (-) 645 WP_001890391.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GPY01_RS07695 - 711104..713467 (+) 2364 WP_123161386.1 DNA polymerase II -
  GPY01_RS07700 - 713439..715538 (-) 2100 WP_184480065.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23751.50 Da        Isoelectric Point: 6.4970

>NTDB_id=356303 GPY01_RS07690 WP_001890391.1 710084..710728(-) (letA) [Vibrio cholerae strain 2011EL-1271]
MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGIGGLEATKKLLRVNPDIKIIV
LTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFADLSERELQIMLMI
TKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGILDTEKL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=356303 GPY01_RS07690 WP_001890391.1 710084..710728(-) (letA) [Vibrio cholerae strain 2011EL-1271]
TTGATTAGTGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAAAGTAGCAGGGGAAGCTGACAGCGGTGAAGAAGCAGTAAAATGGTGCCGTACTAACCATGCGGATGTCATTTTAATGG
ATATGAACATGCCGGGTATTGGTGGCTTGGAAGCAACCAAGAAGCTGTTGCGTGTTAATCCGGACATTAAAATTATCGTA
TTGACGGTACATACCGAAAATCCGTTCCCAACCAAAGTGATGCAAGCGGGTGCCGCAGGTTATCTCACGAAGGGCGCGGC
ACCGGATGAAATGGTCAATGCGATCCGCATCGTTCACAGCGGTCAGCGTTACATTTCTCCAGAAATTGCGCAGCAAATGG
CGTTGAGTCAGTTTTCGCCCGCCTCTGAAAATCCTTTTGCTGATCTCTCCGAGCGTGAATTGCAGATCATGTTAATGATC
ACCAAAGGCCAGAAGGTGACGGACATTTCCGAACAGCTCAGTTTGAGCCCGAAAACCGTCAACAGCTACCGCTACCGTTT
GTTCGCCAAGCTGAATATCAACGGTGATGTGGAATTAACCCACTTAGCTATCCGACACGGGATCTTAGATACTGAGAAGT
TATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KSP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.905

98.131

0.509
  letA Legionella pneumophila strain ERS1305867

51.905

98.131

0.509