Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   VEA_RS03740 Genome accession   NC_013456
Coordinates   781098..781613 (+) Length   171 a.a.
NCBI ID   WP_012841352.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 776098..786613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS03720 (VEA_002321) - 776242..778803 (-) 2562 WP_006742776.1 PBP1A family penicillin-binding protein -
  VEA_RS03725 (VEA_002322) pilM 778947..779963 (+) 1017 WP_005395718.1 type IV pilus assembly protein PilM Machinery gene
  VEA_RS03730 (VEA_002323) pilN 779947..780522 (+) 576 WP_005395717.1 PilN domain-containing protein Machinery gene
  VEA_RS03735 (VEA_002324) pilO 780515..781108 (+) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  VEA_RS03740 (VEA_002325) pilP 781098..781613 (+) 516 WP_012841352.1 pilus assembly protein PilP Machinery gene
  VEA_RS03745 (VEA_002326) pilQ 781639..783387 (+) 1749 WP_006742777.1 type IV pilus secretin PilQ family protein Machinery gene
  VEA_RS03750 (VEA_002327) aroK 783575..784093 (+) 519 WP_005381319.1 shikimate kinase AroK -
  VEA_RS03755 (VEA_002328) aroB 784126..785226 (+) 1101 WP_012841354.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18997.16 Da        Isoelectric Point: 10.5314

>NTDB_id=35629 VEA_RS03740 WP_012841352.1 781098..781613(+) (pilP) [Vibrio antiquarius]
MTSKHLLLVLMGSLLLGCQANDESLTDFIRGVESQARRDVEKLKPADKYVAVTYAPEVQRAPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLVNETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=35629 VEA_RS03740 WP_012841352.1 781098..781613(+) (pilP) [Vibrio antiquarius]
ATGACAAGTAAGCATTTGTTACTGGTACTGATGGGGTCTCTGCTACTTGGATGTCAGGCGAATGATGAGTCATTAACGGA
TTTTATTCGAGGGGTGGAGAGTCAGGCGCGTCGAGATGTCGAGAAACTTAAGCCTGCAGATAAGTATGTTGCCGTCACGT
ACGCACCTGAAGTACAGCGTGCGCCCTTTGAGTTGCCAAAAGAAGCCACCATCGCCACTCAGCCCGTTGCAAGAAAAGAT
TGCTGGCAACCGCCTTCAAGAAGGCGCACTGGCAAATTAGAAAAATTCCCATTAAGCCAATTACGTTTGAAAGGAGTTAT
GGGCATGGGTAATACGGTTTCTGGTCTCGTTCAGGCACCCAATGGAACCGTTTATAAAGTGAAGCCGGGGCAATACCTCG
GACGCAACAATGGCAAAGTGACCCACGTCAGCCATTCCTATTTGTTAGTTAATGAAACGTTGCCCGACGGCTTAGGGTGT
TGGCAGAAGCGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

84.795

100

0.848
  pilP Vibrio cholerae strain A1552

56.395

100

0.567

Multiple sequence alignment