Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   VEA_RS03730 Genome accession   NC_013456
Coordinates   779947..780522 (+) Length   191 a.a.
NCBI ID   WP_005395717.1    Uniprot ID   A0AAE4S901
Organism   Vibrio antiquarius     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 774947..785522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS03715 (VEA_002320) oxyR 775279..776190 (+) 912 WP_005395720.1 DNA-binding transcriptional regulator OxyR -
  VEA_RS03720 (VEA_002321) - 776242..778803 (-) 2562 WP_006742776.1 PBP1A family penicillin-binding protein -
  VEA_RS03725 (VEA_002322) pilM 778947..779963 (+) 1017 WP_005395718.1 type IV pilus assembly protein PilM Machinery gene
  VEA_RS03730 (VEA_002323) pilN 779947..780522 (+) 576 WP_005395717.1 PilN domain-containing protein Machinery gene
  VEA_RS03735 (VEA_002324) pilO 780515..781108 (+) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  VEA_RS03740 (VEA_002325) pilP 781098..781613 (+) 516 WP_012841352.1 pilus assembly protein PilP Machinery gene
  VEA_RS03745 (VEA_002326) pilQ 781639..783387 (+) 1749 WP_006742777.1 type IV pilus secretin PilQ family protein Machinery gene
  VEA_RS03750 (VEA_002327) aroK 783575..784093 (+) 519 WP_005381319.1 shikimate kinase AroK -
  VEA_RS03755 (VEA_002328) aroB 784126..785226 (+) 1101 WP_012841354.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22325.80 Da        Isoelectric Point: 7.0774

>NTDB_id=35627 VEA_RS03730 WP_005395717.1 779947..780522(+) (pilN) [Vibrio antiquarius]
MLYRINLLPWRENQREEHRRRFISLVALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKAEAQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=35627 VEA_RS03730 WP_005395717.1 779947..780522(+) (pilN) [Vibrio antiquarius]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGGTCGC
GTTAGGCATGTTGGTCGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCGGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAGAAAGCGGA
GGCCCAGCATGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.246

100

0.832
  pilN Vibrio cholerae strain A1552

60.106

98.429

0.592

Multiple sequence alignment