Detailed information NTG0356181

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GPY16_RS10785
• Genome accession: NZ_CP046832
• Coordinates: 2324670..2325950 (-)
• Length: 426 a.a.
• NCBI ID: WP_017420950.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 06-2410
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2319670..2330950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY16_RS10770	ppiD	2319698..2321557 (-)	1860	WP_026130414.1	peptidylprolyl isomerase	-
GPY16_RS10775	-	2321734..2322006 (-)	273	WP_013572181.1	HU family DNA-binding protein	-
GPY16_RS10780	lon	2322200..2324551 (-)	2352	WP_038968879.1	endopeptidase La	-
GPY16_RS10785	clpX	2324670..2325950 (-)	1281	WP_017420950.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
GPY16_RS10790	clpP	2326021..2326647 (-)	627	WP_011078149.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
GPY16_RS10795	tig	2326753..2328051 (-)	1299	WP_011149844.1	trigger factor	-
GPY16_RS10800	-	2328603..2330390 (+)	1788	WP_130248292.1	ATP-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46556.07 Da
• Isoelectric Point: 4.5916

>NTDB_id=356181 GPY16_RS10785 WP_017420950.1 2324670..2325950(-) (clpX) [Vibrio vulnificus strain 06-2410]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKRESEALPTPREIRAHLDDYVI
GQDHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDESKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTASLTELD
EEALIQILCQPKNALTKQYAALFELEGADLEFREDALKAIAKKAMERKTGARGLRSILEGVLLETMYELPSMDDVSKVVI
DESVINGESEPLLIYTNSESQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=356181 GPY16_RS10785 WP_017420950.1 2324670..2325950(-) (clpX) [Vibrio vulnificus strain 06-2410]
ATGACAGACAAAAGCAAAGAGAGTGGTAGTGGTAAGTTGCTTTACTGCTCTTTCTGCGGCAAAAGCCAGCACGAAGTTCG
CAAGCTAATCGCTGGTCCATCCGTTTACATCTGTGACGAATGTGTCGATTTATGTAACGACATCATCCGTGAAGAGATCA
AAGATGTGCTTCCAAAACGTGAATCTGAAGCGTTACCAACGCCTCGTGAAATCCGTGCACACCTTGATGACTATGTAATC
GGTCAGGACCATGCGAAAAAAGTGCTCGCGGTTGCGGTATATAACCACTACAAGCGTTTACGTAATGGTGACACAACGAG
TGATGGCGTGGAGCTAGGTAAGAGTAACATCTTGCTGATTGGCCCAACAGGTAGCGGTAAGACGTTGCTTGCTGAGACGC
TTGCGCGTTTCCTCGATGTACCGTTCACTATGGCAGATGCCACGACGCTAACAGAAGCGGGTTACGTGGGCGAAGATGTT
GAAAACATCATTCAAAAGTTGCTTCAGAAATGTGATTACGACGTAGCGAAAGCAGAGCGTGGTATTGTGTATATCGACGA
GATCGACAAGATTTCTCGTAAAGCAGAAAACCCATCGATTACTCGTGACGTTTCTGGTGAAGGCGTTCAACAAGCGCTGC
TTAAACTGGTTGAAGGTACGATTGCTTCTGTACCACCTCAAGGTGGTCGTAAGCATCCTCAGCAAGAGTTTTTGCAAGTG
GATACGTCAAAGATCCTCTTTATCTGTGGTGGTGCATTTGCCGGTCTAGATAAAGTGATCGAACAACGAGTTGCAACAGG
TACCGGCATTGGTTTTGGTGCGGAAGTCCGCTCTAAAGACGAAAGCAAAACAGTGGGCGAATTGTTCACTCAGGTAGAGC
CAGAAGATCTTGTGAAATATGGTTTGATTCCTGAGTTTATTGGTCGTCTTCCAGTGACCGCTTCGTTGACCGAGTTGGAC
GAAGAAGCATTAATTCAGATTCTTTGCCAACCAAAAAATGCGCTAACAAAGCAATATGCAGCACTGTTTGAACTGGAAGG
TGCGGATCTTGAGTTCAGAGAAGATGCGCTAAAAGCGATCGCGAAAAAAGCGATGGAGCGTAAAACAGGCGCTCGTGGTT
TGCGTTCAATTTTGGAAGGCGTGTTGCTAGAAACCATGTATGAACTGCCATCGATGGACGACGTGAGCAAAGTTGTCATT
GATGAATCGGTGATTAATGGTGAATCAGAGCCGCTTTTGATTTACACCAACAGTGAGAGCCAAGCCGCTGGCGCTGAGTA
A

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.102	94.131	0.556
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.07	0.523