Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GPY16_RS09900 Genome accession   NZ_CP046832
Coordinates   2128017..2128661 (-) Length   214 a.a.
NCBI ID   WP_011080857.1    Uniprot ID   A0A3Q0L732
Organism   Vibrio vulnificus strain 06-2410     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2123017..2133661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS09890 pgsA 2125579..2126136 (-) 558 WP_017422339.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPY16_RS09895 uvrC 2126183..2128015 (-) 1833 WP_158105341.1 excinuclease ABC subunit UvrC -
  GPY16_RS09900 letA 2128017..2128661 (-) 645 WP_011080857.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GPY16_RS09905 - 2129018..2131387 (+) 2370 WP_039540051.1 DNA polymerase II -
  GPY16_RS09910 - 2131412..2133514 (-) 2103 WP_130195742.1 PTS sugar transporter subunit IIC/EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23791.42 Da        Isoelectric Point: 6.4960

>NTDB_id=356174 GPY16_RS09900 WP_011080857.1 2128017..2128661(-) (letA) [Vibrio vulnificus strain 06-2410]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGENAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMMMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLSINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=356174 GPY16_RS09900 WP_011080857.1 2128017..2128661(-) (letA) [Vibrio vulnificus strain 06-2410]
TTGATCAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGATAGCGGTGAGAATGCCGTAAAATGGTGTCGTAGCAATCATGCAGACGTCGTTTTAATGG
ATATGAACATGCCTGGTATTGGCGGCTTGGAAGCTACCAAGAAAATTTTGCGTGTTAATCCTGACGTAAAAATCATCGTC
TTAACTGTTCATACGGAAAATCCGTTTCCAACTAAAGTGATGCAAGCGGGGGCTTCTGGTTATTTAACCAAAGGCGCTGG
CCCAGATGAAATGGTGAATGCAATTCGTATTGTCCACAGTGGACAACGTTATATTTCACCAGAAATTGCGCAGCAAATGG
CGTTAAGCCAGTTTTCGCCTGCGTCCGAAAACCCTTTCAAGGATCTCTCTGAGCGCGAGCTTCAGATCATGATGATGATC
ACGAAAGGTCAGAAGGTGACAGATATTTCTGAGCAGTTAAATCTCAGTCCTAAAACTGTCAACAGCTATCGTTATCGTTT
GTTTAGCAAACTATCGATTAATGGTGACGTAGAGTTGACCCATTTGGCGATTCGCCACGGAATGTTAGATACCGAGACTC
TCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.476

98.131

0.495
  letA Legionella pneumophila strain ERS1305867

50.476

98.131

0.495

Multiple sequence alignment