Detailed information NTG0356098

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY55_RS23850
• Genome accession: NZ_CP046831
• Coordinates: 2891146..2892153 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2012AW-0224
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2886146..2897153

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY55_RS23825	rplC	2886680..2887309 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
GPY55_RS23830	rpsJ	2887324..2887635 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY55_RS23835	rpmE	2888093..2888314 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY55_RS23845	priA	2888609..2890813 (+)	2205	WP_029805229.1	primosomal protein N'	Machinery gene
GPY55_RS23850	cytR	2891146..2892153 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
GPY55_RS23855	ftsN	2892330..2892875 (+)	546	WP_005481405.1	cell division protein FtsN	-
GPY55_RS23860	hslV	2893040..2893591 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY55_RS23865	hslU	2893615..2894946 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GPY55_RS23870	-	2895131..2896048 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GPY55_RS23875	rraA	2896125..2896637 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GPY55_RS23880	zapB	2896742..2896984 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=356098 GPY55_RS23850 WP_005481416.1 2891146..2892153(+) (cytR) [Vibrio parahaemolyticus strain 2012AW-0224]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=356098 GPY55_RS23850 WP_005481416.1 2891146..2892153(+) (cytR) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCGCAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGCCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904