Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   E5U06_RS04255 Genome accession   NZ_CP038871
Coordinates   873013..873558 (+) Length   181 a.a.
NCBI ID   WP_061406243.1    Uniprot ID   -
Organism   Pasteurella multocida strain FCf15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 868013..878558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5U06_RS04230 (E5U06_04230) - 868440..869369 (+) 930 WP_005725108.1 phosphatidate cytidylyltransferase -
  E5U06_RS04235 (E5U06_04235) mog 869395..869973 (+) 579 WP_005725110.1 molybdopterin adenylyltransferase -
  E5U06_RS04240 (E5U06_04240) glnB 870018..870356 (+) 339 WP_005725112.1 nitrogen regulatory protein P-II -
  E5U06_RS04245 (E5U06_04245) - 870357..871610 (+) 1254 WP_005755688.1 AI-2E family transporter -
  E5U06_RS04250 (E5U06_04250) - 871790..872974 (+) 1185 WP_061406244.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  E5U06_RS04255 (E5U06_04255) pilF/pilF2 873013..873558 (+) 546 WP_061406243.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  E5U06_RS04260 (E5U06_04260) - 873681..874637 (+) 957 WP_005725132.1 RodZ family helix-turn-helix domain-containing protein -
  E5U06_RS04265 (E5U06_04265) ispG 874664..875767 (+) 1104 WP_005719572.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  E5U06_RS04270 (E5U06_04270) hisS 875797..877068 (+) 1272 WP_061406242.1 histidine--tRNA ligase -
  E5U06_RS04275 (E5U06_04275) - 877087..877698 (+) 612 WP_005725137.1 YfgM family protein -
  E5U06_RS04280 (E5U06_04280) - 877910..878347 (+) 438 WP_005725139.1 isoprenylcysteine carboxylmethyltransferase family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20867.39 Da        Isoelectric Point: 7.8085

>NTDB_id=356095 E5U06_RS04255 WP_061406243.1 873013..873558(+) (pilF/pilF2) [Pasteurella multocida strain FCf15]
MNRTFRFGIASIFSLLLCACVSQEGNNTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGTFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDAVRYQQ
NLQYLTQFDPNRAKKFPPHIE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=356095 E5U06_RS04255 WP_061406243.1 873013..873558(+) (pilF/pilF2) [Pasteurella multocida strain FCf15]
ATGAACCGCACTTTTCGATTTGGGATCGCGAGCATTTTTTCTCTTTTGCTTTGTGCTTGTGTGAGTCAAGAAGGTAACAA
TACGTTTGATTCACATGAGGCGGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTACCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTAGTTTGGTGTGCGTCTTTTGCCAAAGATGCTGTCCGTTATCAACAA
AATTTGCAATATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

52.096

92.265

0.481
  pilF Glaesserella parasuis strain SC1401

45.405

100

0.464

Multiple sequence alignment