Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   E5L67_RS01335 Genome accession   NZ_CP038868
Coordinates   257016..257786 (-) Length   256 a.a.
NCBI ID   WP_002776372.1    Uniprot ID   A0A3H9IIK0
Organism   Campylobacter coli strain 16SHKX65C     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 252016..262786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5L67_RS01305 aspS 252152..253903 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  E5L67_RS01310 - 253900..254475 (+) 576 WP_002776379.1 adenylate kinase -
  E5L67_RS01315 ppa 254485..255003 (+) 519 WP_002776378.1 inorganic diphosphatase -
  E5L67_RS01320 msrA 255051..255551 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  E5L67_RS01325 - 255774..256628 (-) 855 WP_370658880.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  E5L67_RS01330 ruvX 256639..257019 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  E5L67_RS01335 dprA 257016..257786 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  E5L67_RS01340 - 257776..258828 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  E5L67_RS01345 ilvC 258831..259853 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  E5L67_RS01350 - 259976..261910 (+) 1935 WP_002781664.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28943.38 Da        Isoelectric Point: 5.2618

>NTDB_id=356059 E5L67_RS01335 WP_002776372.1 257016..257786(-) (dprA) [Campylobacter coli strain 16SHKX65C]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=356059 E5L67_RS01335 WP_002776372.1 257016..257786(-) (dprA) [Campylobacter coli strain 16SHKX65C]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9IIK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment