Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E4Z98_RS00390 Genome accession   NZ_CP038865
Coordinates   83613..84983 (+) Length   456 a.a.
NCBI ID   WP_135255119.1    Uniprot ID   -
Organism   Vagococcus xieshaowenii strain CF-49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 78613..89983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS00365 (E4Z98_00365) - 79802..80059 (+) 258 WP_135255123.1 metal-sensitive transcriptional regulator -
  E4Z98_RS00370 (E4Z98_00370) - 80183..81223 (+) 1041 WP_135255122.1 YibE/F family protein -
  E4Z98_RS00375 (E4Z98_00375) - 81220..81978 (+) 759 WP_135255121.1 YibE/F family protein -
  E4Z98_RS00380 (E4Z98_00380) - 81988..82887 (+) 900 WP_241856701.1 PhzF family phenazine biosynthesis isomerase -
  E4Z98_RS00385 (E4Z98_00385) - 82960..83493 (+) 534 WP_135255120.1 dUTP diphosphatase -
  E4Z98_RS00390 (E4Z98_00390) radA 83613..84983 (+) 1371 WP_135255119.1 DNA repair protein RadA Machinery gene
  E4Z98_RS00395 (E4Z98_00395) - 85005..86108 (+) 1104 WP_135255118.1 PIN/TRAM domain-containing protein -
  E4Z98_RS00400 (E4Z98_00400) gltX 86157..87620 (+) 1464 WP_135255117.1 glutamate--tRNA ligase -
  E4Z98_RS00405 (E4Z98_00405) epsC 87902..88459 (+) 558 WP_135255116.1 serine O-acetyltransferase EpsC -
  E4Z98_RS00410 (E4Z98_00410) cysS 88443..89852 (+) 1410 WP_135255115.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49975.41 Da        Isoelectric Point: 6.6993

>NTDB_id=356025 E4Z98_RS00390 WP_135255119.1 83613..84983(+) (radA) [Vagococcus xieshaowenii strain CF-49]
MAKKAKTHFECQACGYISPQYLGRCPNCGTWNEMMEVKVQEESARNSRVDMTGKQAKPQTLGEVATNKTPRVKTQMDELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLHLSGGKVLYVSGEESAEQIKMRAERLNVEGNDFYVYPETDMSLISQ
TIETLKPDYVIIDSIQTMMQPEISSASGSVSQVRETTAELMKIAKSNRIAIFIVGHVTKEGALAGPRMLEHMVDTVLYFE
GDRHHTFRILRAVKNRFGSTNEIGIFEMQERGLVEVTNPSEVFLEERLDGATGSAIVVSMEGSRPILAEVQALVSPTLFG
NARRTATGLDYNRVTLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAMSIASSYKDKGTDATECFIGEIGLTG
EIRRVNRIDHRVKEAQKLGFKKVYVPVNNLHGWEPPTTIEVIGISTISEALKRVFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=356025 E4Z98_RS00390 WP_135255119.1 83613..84983(+) (radA) [Vagococcus xieshaowenii strain CF-49]
GTGGCTAAAAAAGCAAAAACGCATTTTGAATGTCAGGCGTGTGGCTATATTTCGCCTCAATATTTAGGCCGTTGCCCAAA
TTGTGGTACGTGGAACGAAATGATGGAAGTGAAAGTTCAAGAAGAATCTGCTCGTAACAGTCGTGTCGATATGACCGGAA
AGCAAGCAAAACCGCAAACATTGGGTGAAGTGGCCACCAATAAAACACCACGCGTTAAAACGCAAATGGATGAGTTGAAT
CGTGTCCTAGGTGGTGGTGTAGTGCCGGGTTCTTTAGTATTAATTGGAGGAGATCCAGGAATAGGGAAATCCACATTATT
GCTACAAGTATCACAACAATTGCATTTATCTGGAGGTAAAGTGCTCTATGTCTCAGGAGAAGAAAGCGCGGAACAAATTA
AAATGCGTGCCGAGCGTTTGAATGTAGAGGGCAATGACTTCTATGTCTATCCTGAAACCGACATGTCCTTAATTAGCCAA
ACCATTGAAACATTGAAACCTGATTACGTCATTATTGATTCAATTCAAACGATGATGCAACCAGAGATTAGCAGTGCTTC
AGGTAGCGTGAGTCAAGTGCGTGAAACCACAGCAGAATTAATGAAGATTGCCAAAAGTAATCGAATTGCTATTTTTATCG
TAGGACACGTGACGAAAGAAGGTGCGTTAGCGGGACCTAGAATGCTAGAGCATATGGTCGATACTGTTCTTTACTTTGAA
GGGGATCGTCATCATACGTTTAGAATTTTAAGAGCAGTTAAAAATCGTTTTGGATCAACAAATGAAATTGGCATTTTTGA
GATGCAAGAACGTGGATTAGTAGAAGTGACCAATCCTTCAGAAGTCTTTTTGGAAGAACGTCTAGATGGGGCAACAGGTT
CAGCGATTGTTGTGTCAATGGAAGGGAGTCGTCCGATACTAGCCGAAGTTCAAGCGTTAGTCAGTCCAACTTTGTTTGGT
AACGCAAGACGAACCGCAACAGGCTTAGATTATAACCGCGTCACTTTGATTATGGCTGTTCTAGAAAAACGAGCAGGCTT
ATTATTACAAAATCAAGACGCCTACTTAAAAGCCGCAGGTGGTGTGAAGTTGGATGAACCAGCGATTGATTTGGCGATTG
CGATGAGTATTGCTTCAAGCTACAAAGACAAGGGAACTGATGCGACGGAATGTTTTATTGGAGAAATTGGATTGACCGGT
GAAATTCGTCGGGTTAATCGTATTGACCACCGTGTCAAAGAAGCACAAAAGTTAGGGTTTAAAAAAGTATACGTGCCAGT
GAATAACTTACATGGTTGGGAGCCACCAACAACGATTGAAGTAATTGGTATTTCAACGATTAGTGAAGCATTGAAACGTG
TCTTTGGATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

AAA domain (AAA_25)

(68-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

72.527

99.781

0.724
  radA Streptococcus mitis NCTC 12261

72.527

99.781

0.724
  radA Streptococcus pneumoniae Rx1

72.308

99.781

0.721
  radA Streptococcus pneumoniae D39

72.308

99.781

0.721
  radA Streptococcus pneumoniae R6

72.308

99.781

0.721
  radA Streptococcus pneumoniae TIGR4

72.308

99.781

0.721
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

100

0.649

Multiple sequence alignment