Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   E5Z46_RS07770 Genome accession   NZ_CP038860
Coordinates   1501962..1503785 (+) Length   607 a.a.
NCBI ID   WP_042379620.1    Uniprot ID   -
Organism   Geobacillus kaustophilus NBRC 102445     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1496962..1508785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Z46_RS07750 (E5Z46_07745) - 1497290..1497949 (-) 660 WP_014195176.1 TerC family protein -
  E5Z46_RS07755 (E5Z46_07750) mecA 1498160..1498840 (+) 681 WP_011230320.1 adaptor protein MecA -
  E5Z46_RS07760 (E5Z46_07755) cls 1498937..1500445 (+) 1509 WP_011230321.1 cardiolipin synthase -
  E5Z46_RS07765 (E5Z46_07760) - 1500634..1501962 (+) 1329 WP_011230322.1 competence protein CoiA -
  E5Z46_RS07770 (E5Z46_07765) pepF 1501962..1503785 (+) 1824 WP_042379620.1 oligoendopeptidase F Regulator
  E5Z46_RS07775 (E5Z46_07770) - 1503799..1503996 (-) 198 WP_011230324.1 hypothetical protein -
  E5Z46_RS07780 (E5Z46_07775) spxH 1504422..1505318 (-) 897 WP_042379622.1 ClpXP adapter protein SpxH -
  E5Z46_RS07785 (E5Z46_07780) - 1505311..1505724 (-) 414 WP_042379624.1 globin -
  E5Z46_RS07790 (E5Z46_07785) - 1505827..1506450 (-) 624 WP_042379626.1 lytic transglycosylase domain-containing protein -
  E5Z46_RS07795 (E5Z46_07790) - 1506447..1507040 (-) 594 WP_042379628.1 CYTH domain-containing protein -
  E5Z46_RS07800 (E5Z46_07795) - 1507176..1507553 (+) 378 WP_042379630.1 hypothetical protein -
  E5Z46_RS07805 (E5Z46_07800) - 1507704..1508342 (+) 639 WP_011230330.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70249.37 Da        Isoelectric Point: 4.9445

>NTDB_id=355994 E5Z46_RS07770 WP_042379620.1 1501962..1503785(+) (pepF) [Geobacillus kaustophilus NBRC 102445]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALQYQDEVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAINEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSDTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NTLAGTVKKDNFFARIRRYSSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQDV
KMEVTYDEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAEMLTALYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAAIALSKQILEEGEPAVTRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=355994 E5Z46_RS07770 WP_042379620.1 1501962..1503785(+) (pepF) [Geobacillus kaustophilus NBRC 102445]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCGGTTGAGGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAGTTCAAACAAGTGAAGGCAATGATTCCGAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGTTGTATGAAGCATTGCAATACCAAGATGAAGTGTCGATGCGCCTAGGCAAG
CTGTATACATACGCCCATATGCGCTATGACCAAGATACGACCAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCAATGAAGCGGTGTTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAGATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCGGAAGAAGAAGCGATATTGGCGCAGGCGGCCGAAGTGATGCAGGCGACATCCGACACGTTCAGCGCGTTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGACGAAAACGGCGAGGAAGTCGAAGTAACGCATGGCCGGTTCATCCGCTTTTTAG
AAAGCACTGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAACACGTTCGCC
AATACGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGCATCCGCCGCTACAGCTCGGCGCGGGAAGCGGCGTT
GGATGCGAACAACATTCCGGAGAGCGTCTATGACAACTTGATCGCCACGATTCACGAACATTTGCCGCTGTTGCACCGGT
ACGTACGGCTGCGCAAACGAGTGCTTGGGCTTGATGAGCTGCATATGTACGACTTGTACACGCCGCTTGTCCAAGATGTG
AAAATGGAAGTGACGTACGACGAAGCGAAGCAATATATGCTTGAAGGGCTAGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTGAAAGAAGGTCTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAACGAAGCGGCGCCTATTCGTCGGGAG
CATACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAGTTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCGTATGCGCATTATTCAATCTTCGTCGCCGAAGTGGC
GTCGACGTGCAATGAGGCGCTGTTGAACGACTATTTGCTGAAAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCTGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGTGAAGCGTTGACGGCCGAAATGTTGACTGCTCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCGCATTTTTATTACAACTACTATGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGATTGCACTCAGCAAACAAATTTTGGAAGAAGGCGAACCGGCGGTGACACGGTACATCGAC
TTTTTGAAAGCCGGCAGCTCTGATTACCCGATTGAAGTGCTGAAAAAAGCCGGCGTCGACATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAACGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.927

97.694

0.498

Multiple sequence alignment