Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GP469_RS13425 Genome accession   NZ_CP046808
Coordinates   2711484..2712128 (+) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain 2013V-1146     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2706484..2717128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP469_RS13405 - 2706781..2707101 (-) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -
  GP469_RS13410 yeiP 2707104..2707670 (-) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  GP469_RS13415 - 2707857..2708624 (+) 768 WP_021447485.1 nucleotidyltransferase domain-containing protein -
  GP469_RS13420 - 2708621..2710984 (-) 2364 WP_005489176.1 DNA polymerase II -
  GP469_RS13425 letA 2711484..2712128 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GP469_RS13430 uvrC 2712130..2713962 (+) 1833 WP_005494715.1 excinuclease ABC subunit UvrC Machinery gene
  GP469_RS13435 pgsA 2714009..2714566 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=355935 GP469_RS13425 WP_005386783.1 2711484..2712128(+) (letA) [Vibrio parahaemolyticus strain 2013V-1146]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=355935 GP469_RS13425 WP_005386783.1 2711484..2712128(+) (letA) [Vibrio parahaemolyticus strain 2013V-1146]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCCCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTTGAGTTAACACATTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5