Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GPY29_RS12610 Genome accession   NZ_CP046787
Coordinates   2488430..2489074 (-) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2483430..2494074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS12600 pgsA 2485992..2486549 (-) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPY29_RS12605 uvrC 2486596..2488428 (-) 1833 WP_025542224.1 excinuclease ABC subunit UvrC -
  GPY29_RS12610 letA 2488430..2489074 (-) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GPY29_RS12615 - 2489573..2491936 (+) 2364 WP_029838230.1 DNA polymerase II -
  GPY29_RS12620 - 2491933..2492700 (-) 768 WP_025626208.1 nucleotidyltransferase domain-containing protein -
  GPY29_RS12625 yeiP 2492887..2493453 (+) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  GPY29_RS12630 - 2493456..2493776 (+) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=355819 GPY29_RS12610 WP_005386783.1 2488430..2489074(-) (letA) [Vibrio parahaemolyticus strain 2013V-1174]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=355819 GPY29_RS12610 WP_005386783.1 2488430..2489074(-) (letA) [Vibrio parahaemolyticus strain 2013V-1174]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTAGTCAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTTGAGTTAACACATTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5