Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SaO82_RS02950 Genome accession   NZ_CP038819
Coordinates   593791..594360 (+) Length   189 a.a.
NCBI ID   WP_000872880.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O82     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 588791..599360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO82_RS02925 (SaO82_0550) cysE 590004..590651 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  SaO82_RS02930 (SaO82_0551) cysS 590635..592035 (+) 1401 WP_136142532.1 cysteine--tRNA ligase -
  SaO82_RS02935 (SaO82_0552) - 592028..592432 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  SaO82_RS02940 (SaO82_0553) rlmB 592440..593186 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SaO82_RS02945 (SaO82_0554) - 593186..593710 (+) 525 WP_000664738.1 NYN domain-containing protein -
  SaO82_RS02950 (SaO82_0555) sigH 593791..594360 (+) 570 WP_000872880.1 RNA polymerase sigma factor Regulator
  SaO82_RS02955 rpmG 594475..594618 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  SaO82_RS02960 (SaO82_0556) secE 594674..594856 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SaO82_RS02965 (SaO82_0557) nusG 594869..595417 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SaO82_RS02970 (SaO82_0558) rplK 595598..596020 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SaO82_RS02975 (SaO82_0559) rplA 596228..596920 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SaO82_RS02985 (SaO82_0560) rplJ 597192..597692 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SaO82_RS02990 (SaO82_0561) rplL 597736..598104 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SaO82_RS02995 (SaO82_0562) - 598279..598887 (+) 609 WP_046597527.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23078.91 Da        Isoelectric Point: 9.5219

>NTDB_id=355792 SaO82_RS02950 WP_000872880.1 593791..594360(+) (sigH) [Staphylococcus aureus strain O82]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIWMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMNLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=355792 SaO82_RS02950 WP_000872880.1 593791..594360(+) (sigH) [Staphylococcus aureus strain O82]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGACAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATATGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGAATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment