Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KAN01_RS02030 Genome accession   NZ_CP038816
Coordinates   425882..426517 (-) Length   211 a.a.
NCBI ID   WP_025469374.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420882..431517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS01995 (KAN01_01995) mlaE 421210..421986 (+) 777 WP_031955924.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  KAN01_RS02000 (KAN01_02000) - 421986..422669 (+) 684 WP_135924496.1 outer membrane lipid asymmetry maintenance protein MlaD -
  KAN01_RS02005 (KAN01_02005) - 422696..423337 (+) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  KAN01_RS02010 (KAN01_02010) - 423349..423636 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  KAN01_RS02015 (KAN01_02015) - 423711..424724 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  KAN01_RS02020 (KAN01_02020) - 424882..425463 (+) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  KAN01_RS02025 (KAN01_02025) - 425478..425879 (+) 402 WP_004711784.1 NUDIX hydrolase -
  KAN01_RS02030 (KAN01_02030) comF 425882..426517 (-) 636 WP_025469374.1 ComF family protein Machinery gene
  KAN01_RS02035 (KAN01_02035) recG 426510..428555 (-) 2046 WP_135924498.1 ATP-dependent DNA helicase RecG -
  KAN01_RS02040 (KAN01_02040) - 428576..429391 (+) 816 WP_032011502.1 NAD(P)H-binding protein -
  KAN01_RS02045 (KAN01_02045) adeT2 429470..430456 (+) 987 WP_032011503.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24644.85 Da        Isoelectric Point: 9.8677

>NTDB_id=355728 KAN01_RS02030 WP_025469374.1 425882..426517(-) (comF) [Acinetobacter nosocomialis strain KAN01]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQYKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=355728 KAN01_RS02030 WP_025469374.1 425882..426517(-) (comF) [Acinetobacter nosocomialis strain KAN01]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAACCGCATAATTCAGCAGTACAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAGGTTTTACAGCAAATAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCATTATTGCTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGGTTGTCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.735

100

0.957
  comF Acinetobacter baumannii D1279779

94.787

100

0.948

Multiple sequence alignment