Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | E5Z44_RS09610 | Genome accession | NZ_CP038807 |
| Coordinates | 2061519..2062493 (-) | Length | 324 a.a. |
| NCBI ID | WP_002491905.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain APC 3758 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2056519..2067493
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Z44_RS09570 (E5Z44_09705) | gcvT | 2057093..2058184 (-) | 1092 | WP_037540763.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| E5Z44_RS09575 (E5Z44_09710) | - | 2058354..2058872 (-) | 519 | WP_002459021.1 | shikimate kinase | - |
| E5Z44_RS09585 (E5Z44_09720) | - | 2059026..2059484 (-) | 459 | WP_311201967.1 | competence type IV pilus minor pilin ComGF | - |
| E5Z44_RS09590 (E5Z44_09725) | - | 2059447..2059740 (-) | 294 | WP_002459018.1 | hypothetical protein | - |
| E5Z44_RS09595 (E5Z44_09730) | comGD | 2059727..2060221 (-) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| E5Z44_RS09600 (E5Z44_09735) | comGC | 2060154..2060468 (-) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| E5Z44_RS09605 (E5Z44_09740) | comGB | 2060483..2061547 (-) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| E5Z44_RS09610 (E5Z44_09745) | comGA | 2061519..2062493 (-) | 975 | WP_002491905.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| E5Z44_RS09615 (E5Z44_09750) | - | 2062540..2063163 (-) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| E5Z44_RS09620 (E5Z44_09755) | - | 2063167..2063490 (-) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| E5Z44_RS09625 (E5Z44_09760) | - | 2063490..2064476 (-) | 987 | WP_002491907.1 | ROK family glucokinase | - |
| E5Z44_RS09630 (E5Z44_09765) | - | 2064473..2064676 (-) | 204 | WP_002459010.1 | YqgQ family protein | - |
| E5Z44_RS09635 (E5Z44_09770) | - | 2064660..2066117 (-) | 1458 | WP_002491909.1 | rhomboid family protein | - |
| E5Z44_RS09640 (E5Z44_09775) | - | 2066134..2066670 (-) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| E5Z44_RS09645 (E5Z44_09780) | rpmG | 2066920..2067069 (-) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36993.89 Da Isoelectric Point: 8.2830
>NTDB_id=355547 E5Z44_RS09610 WP_002491905.1 2061519..2062493(-) (comGA) [Staphylococcus lugdunensis strain APC 3758]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDISTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVYYEELNLSIYTKLLTFMKFQAGLDISTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRNASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=355547 E5Z44_RS09610 WP_002491905.1 2061519..2062493(-) (comGA) [Staphylococcus lugdunensis strain APC 3758]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATATATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTATATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATATATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAATTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAAATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.588 |
99.691 |
0.704 |
| comGA | Staphylococcus aureus N315 |
70.588 |
99.691 |
0.704 |