Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HNEAP_RS08850 Genome accession   NC_013422
Coordinates   1912651..1914033 (+) Length   460 a.a.
NCBI ID   WP_012824634.1    Uniprot ID   -
Organism   Halothiobacillus neapolitanus c2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1907651..1919033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNEAP_RS08825 (Hneap_1773) flgE 1908360..1909616 (-) 1257 WP_012824629.1 flagellar hook protein FlgE -
  HNEAP_RS08830 (Hneap_1774) - 1909670..1910407 (-) 738 WP_012824630.1 flagellar hook assembly protein FlgD -
  HNEAP_RS08835 (Hneap_1775) flgC 1910420..1910821 (-) 402 WP_012824631.1 flagellar basal body rod protein FlgC -
  HNEAP_RS08840 (Hneap_1776) flgB 1910835..1911233 (-) 399 WP_012824632.1 flagellar basal body rod protein FlgB -
  HNEAP_RS08845 (Hneap_1777) - 1911377..1912651 (+) 1275 WP_012824633.1 HlyC/CorC family transporter -
  HNEAP_RS08850 (Hneap_1778) radA 1912651..1914033 (+) 1383 WP_012824634.1 DNA repair protein RadA Machinery gene
  HNEAP_RS13060 (Hneap_1779) - 1914087..1914218 (-) 132 WP_012824635.1 hypothetical protein -
  HNEAP_RS12325 (Hneap_1780) - 1914334..1914729 (-) 396 WP_012824636.1 HEAT repeat domain-containing protein -
  HNEAP_RS08860 (Hneap_1781) - 1915050..1915481 (+) 432 WP_012824637.1 hypothetical protein -
  HNEAP_RS08865 (Hneap_1782) - 1915574..1916269 (-) 696 WP_012824638.1 electron transport complex subunit E -
  HNEAP_RS08870 (Hneap_1783) - 1916262..1917032 (-) 771 WP_012824639.1 RnfABCDGE type electron transport complex subunit G -
  HNEAP_RS08875 (Hneap_1784) rsxD 1917043..1918092 (-) 1050 WP_012824640.1 electron transport complex subunit RsxD -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49010.41 Da        Isoelectric Point: 7.1222

>NTDB_id=35530 HNEAP_RS08850 WP_012824634.1 1912651..1914033(+) (radA) [Halothiobacillus neapolitanus c2]
MARAKEKSAFVCQECGADFPKWAGRCSECGAWNSLTEIRLPSNASSASSPGVSGYAGSNPQTTLISEVRISETPRETTGL
DELDRVLGGGLVEGSVILIGGDPGIGKSTLLLQTLLTLQAHMPCLYVTGEESLQQVALRAQRLEADLSGKQGQLTLMSET
SVEAILAHCARQLPRLLVVDSIQTLHTEGLTAAPGSVSQLREGTAQLVRFAKRHEVTIFIVGHVTKEGALAGPRVLEHMV
DTVLYFEGDPGARFRVIRAVKNRFGAANEIGVFAMTDRGLKPVTNPSAIFLSRHEQPVPGSVITVTREGTRPLLVEVQAL
VAEHPGGNPKRLTVGLDQNRLAMLLAVLHRHGQIALYDQDVFLNVVGGVRVAETAADLPSLLAILSSFRARPLPEGLIVF
GEVGLAGEIRPVSGGPERLAEAAKHGFTHAIVPKANMPARPIDGLKITAVSHLNQALELL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=35530 HNEAP_RS08850 WP_012824634.1 1912651..1914033(+) (radA) [Halothiobacillus neapolitanus c2]
ATGGCGCGCGCCAAGGAAAAATCCGCCTTCGTCTGTCAGGAGTGCGGCGCCGATTTCCCCAAGTGGGCAGGCCGTTGCAG
CGAATGCGGGGCATGGAACAGCCTCACCGAAATCCGCCTGCCCAGTAACGCATCGTCTGCCAGTTCACCCGGTGTCAGCG
GCTATGCAGGAAGCAACCCGCAAACCACCCTGATTTCCGAAGTGCGCATCAGCGAAACGCCGAGAGAAACAACCGGGCTG
GATGAACTCGATCGCGTGTTAGGTGGCGGCTTAGTCGAAGGCTCGGTGATTCTCATTGGCGGCGATCCGGGTATTGGCAA
ATCAACCCTTTTGCTGCAAACCCTGCTCACACTGCAGGCGCATATGCCCTGCCTCTACGTGACCGGCGAGGAATCGCTGC
AACAGGTCGCGTTGCGCGCCCAGCGCTTAGAAGCCGATCTTTCCGGCAAACAAGGCCAGCTCACCTTGATGAGTGAAACA
TCGGTCGAGGCCATTCTGGCGCACTGCGCCCGCCAATTACCGCGATTGCTGGTGGTCGATTCCATCCAGACCCTGCACAC
CGAAGGGCTCACCGCCGCACCGGGCTCGGTATCTCAATTACGCGAAGGCACGGCGCAGCTTGTCCGCTTTGCCAAACGCC
ACGAAGTGACCATCTTCATTGTCGGTCATGTCACCAAGGAAGGCGCCCTGGCCGGGCCGCGCGTGCTCGAACACATGGTC
GATACCGTACTTTATTTCGAGGGTGATCCCGGTGCGCGTTTTCGGGTGATTCGTGCGGTCAAGAATCGTTTTGGCGCCGC
CAATGAAATCGGCGTATTCGCCATGACCGACCGCGGCCTGAAACCCGTCACTAACCCATCCGCCATTTTTTTGTCGCGCC
ATGAACAACCGGTTCCCGGCAGCGTCATTACTGTCACGCGTGAAGGTACCCGCCCCTTGCTGGTCGAAGTTCAGGCGCTC
GTTGCCGAACACCCCGGCGGCAACCCAAAGCGCTTGACCGTCGGCCTCGACCAGAACCGGTTAGCCATGCTGCTGGCCGT
GCTGCACCGGCACGGCCAAATCGCTTTGTATGATCAGGATGTGTTTCTGAATGTGGTTGGCGGCGTGCGCGTCGCGGAAA
CGGCAGCCGATCTGCCCAGCCTGCTGGCGATTCTGTCGAGCTTCCGGGCCCGGCCGCTACCGGAAGGATTGATTGTTTTT
GGTGAAGTGGGACTCGCCGGTGAAATCCGCCCCGTCAGCGGCGGGCCCGAGCGCCTTGCCGAAGCCGCAAAGCACGGCTT
TACCCACGCCATCGTGCCCAAAGCGAACATGCCCGCCCGCCCTATCGACGGGCTGAAGATCACCGCTGTCAGCCACCTCA
ATCAGGCGCTGGAACTGCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

KaiC (ATPase)

(78-265)

Subunit ChlI of Mg-chelatase (ChlI)

(359-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.487
  radA Streptococcus mitis SK321

46.711

99.13

0.463
  radA Streptococcus mitis NCTC 12261

46.696

98.696

0.461
  radA Streptococcus pneumoniae TIGR4

48.387

94.348

0.457
  radA Streptococcus pneumoniae Rx1

48.387

94.348

0.457
  radA Streptococcus pneumoniae D39

48.387

94.348

0.457
  radA Streptococcus pneumoniae R6

48.387

94.348

0.457

Multiple sequence alignment