Detailed information NTG0355295

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GPY46_RS20645
• Genome accession: NZ_CP046776
• Coordinates: 2379277..2380557 (-)
• Length: 426 a.a.
• NCBI ID: WP_005460618.1
• Uniprot ID: Q87R79
• Organism: Vibrio parahaemolyticus strain AM43962
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2374277..2385557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY46_RS20635	-	2376329..2376601 (-)	273	WP_005382341.1	HU family DNA-binding protein	-
GPY46_RS20640	lon	2376794..2379145 (-)	2352	WP_005493728.1	endopeptidase La	-
GPY46_RS20645	clpX	2379277..2380557 (-)	1281	WP_005460618.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
GPY46_RS20650	clpP	2380629..2381255 (-)	627	WP_005460620.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
GPY46_RS20655	tig	2381361..2382665 (-)	1305	WP_005460612.1	trigger factor	-
GPY46_RS25355	-	2382959..2383144 (-)	186	WP_005482581.1	hypothetical protein	-
GPY46_RS20660	-	2383191..2384993 (+)	1803	WP_158127974.1	ATP-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46693.23 Da
• Isoelectric Point: 4.5914

>NTDB_id=355295 GPY46_RS20645 WP_005460618.1 2379277..2380557(-) (clpX) [Vibrio parahaemolyticus strain AM43962]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKKESEALPTPKQIREHLDDYVI
GQDYAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKNETKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTTTLTELD
EEALIQILCEPKNALTKQYAALFELENAELEFREDALRAIAKKAMERKTGARGLRSILESVLLETMYELPSATDVSKVVI
DESVINGESEPLLIYSNADNQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=355295 GPY46_RS20645 WP_005460618.1 2379277..2380557(-) (clpX) [Vibrio parahaemolyticus strain AM43962]
ATGACAGATAAAAGCAAAGAAAGTGGCAGCGGTAAATTGCTGTACTGTTCTTTCTGCGGCAAAAGTCAGCACGAAGTTCG
CAAGCTAATCGCAGGTCCGTCAGTTTACATTTGCGACGAGTGTGTCGACCTATGTAACGATATTATTCGCGAAGAAATCA
AGGATGTTCTCCCTAAGAAAGAATCTGAAGCGTTACCAACGCCAAAACAGATCCGTGAACACCTTGACGACTATGTGATC
GGACAAGATTACGCGAAAAAAGTGCTCGCAGTTGCGGTATATAACCACTACAAGCGTTTACGCAATGGTGATACAACGAG
CGAAGGTGTGGAGCTTGGTAAAAGTAACATCCTTCTAATTGGTCCTACAGGTAGTGGTAAAACGCTGCTTGCTGAGACGC
TAGCTCGATTCTTGGATGTGCCATTCACAATGGCAGACGCAACCACACTAACCGAAGCTGGTTATGTGGGTGAAGACGTT
GAAAACATCATCCAAAAGCTTCTGCAAAAATGTGATTACGATGTAGCGAAAGCTGAACGCGGCATTGTTTACATTGACGA
AATTGACAAAATTTCACGCAAAGCTGAAAACCCATCAATTACGCGTGACGTATCTGGTGAAGGTGTTCAGCAAGCGCTAT
TGAAACTTATCGAAGGTACGGTTGCTTCAGTTCCACCTCAAGGTGGTCGTAAGCATCCACAGCAAGAATTCCTACAAGTG
GACACGTCTAAGATTCTGTTCATCTGTGGTGGCGCATTTGCTGGTTTAGATAAAGTTATCGAACAGCGTGTAGCTACGGG
TACTGGTATCGGCTTTGGTGCAGAAGTGCGCTCGAAGAACGAAACCAAAACCGTCGGCGAACTGTTTACTCAGGTTGAGC
CAGAAGATCTAGTGAAGTATGGTTTGATTCCAGAATTCATTGGTCGTCTTCCTGTGACAACAACACTGACAGAGCTTGAT
GAAGAAGCGTTGATTCAGATCCTATGTGAACCGAAAAACGCACTGACCAAGCAGTATGCAGCATTGTTTGAGCTAGAAAA
CGCAGAGCTTGAATTCCGTGAAGATGCCCTTCGTGCTATCGCGAAGAAAGCAATGGAACGTAAGACAGGTGCTCGTGGTT
TGCGTTCAATTCTGGAAAGTGTTCTGCTTGAAACCATGTACGAACTGCCATCTGCGACAGATGTAAGTAAAGTCGTGATT
GATGAATCCGTCATCAATGGTGAGTCAGAGCCACTGCTTATTTACAGCAATGCCGACAATCAGGCAGCTGGGGCAGAATA
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: Q87R79

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	58.853	94.131	0.554
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.321	95.07	0.516