Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   E5D09_RS01650 Genome accession   NZ_CP038644
Coordinates   352100..352480 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ACN21     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347100..357480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5D09_RS01620 (E5D09_01620) tadA 347217..347721 (-) 505 Protein_325 tRNA adenosine(34) deaminase TadA -
  E5D09_RS01625 (E5D09_01625) - 347728..348852 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  E5D09_RS01630 (E5D09_01630) ung 348849..349562 (-) 714 WP_029424376.1 uracil-DNA glycosylase -
  E5D09_RS01635 (E5D09_01635) - 349613..350209 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  E5D09_RS01640 (E5D09_01640) gspK 350440..351399 (-) 960 WP_029424377.1 type II secretion system minor pseudopilin GspK -
  E5D09_RS01645 (E5D09_01645) xcpW 351399..352100 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  E5D09_RS01650 (E5D09_01650) xcpV 352100..352480 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  E5D09_RS01655 (E5D09_01655) - 352470..353024 (-) 555 WP_005128793.1 type II secretion system protein -
  E5D09_RS01660 (E5D09_01660) - 353034..353642 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  E5D09_RS01665 (E5D09_01665) - 353680..354453 (-) 774 WP_000497295.1 TatD family hydrolase -
  E5D09_RS01670 (E5D09_01670) - 354471..354812 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  E5D09_RS01675 (E5D09_01675) - 354824..355804 (-) 981 WP_001075409.1 DNA polymerase III subunit delta' -
  E5D09_RS01680 (E5D09_01680) kdsB 355816..356577 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=355286 E5D09_RS01650 WP_000836911.1 352100..352480(-) (xcpV) [Acinetobacter baumannii strain ACN21]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=355286 E5D09_RS01650 WP_000836911.1 352100..352480(-) (xcpV) [Acinetobacter baumannii strain ACN21]
ATGAAATCTAAAGGCTTTACCCTTTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment