Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SaO268_RS06630 Genome accession   NZ_CP038612
Coordinates   1278242..1279114 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O268     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1273242..1284114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO268_RS06605 (SaO268_1221) - 1273388..1274155 (+) 768 WP_000176392.1 ribonuclease HII -
  SaO268_RS06610 (SaO268_1222) sucC 1274264..1275430 (+) 1167 WP_001020804.1 ADP-forming succinate--CoA ligase subunit beta -
  SaO268_RS06615 (SaO268_1223) sucD 1275452..1276360 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  SaO268_RS15090 - 1276586..1276641 (+) 56 Protein_1256 YSIRK-type signal peptide-containing protein -
  SaO268_RS06620 (SaO268_1224) - 1276646..1276798 (+) 153 Protein_1257 cell wall hydrolase -
  SaO268_RS06625 (SaO268_1225) fmhC 1276826..1278070 (+) 1245 WP_000672856.1 FemA/FemB family glycyltransferase FmhC -
  SaO268_RS06630 (SaO268_1226) dprA 1278242..1279114 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  SaO268_RS06635 (SaO268_1227) topA 1279288..1281363 (+) 2076 WP_014532615.1 type I DNA topoisomerase -
  SaO268_RS06640 (SaO268_1228) trmFO 1281519..1282826 (+) 1308 WP_000195262.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=355179 SaO268_RS06630 WP_000620182.1 1278242..1279114(+) (dprA) [Staphylococcus aureus strain O268]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=355179 SaO268_RS06630 WP_000620182.1 1278242..1279114(+) (dprA) [Staphylococcus aureus strain O268]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGACATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACGAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCGCCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGTAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986

Multiple sequence alignment