Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GPY19_RS00345 Genome accession   NZ_CP046763
Coordinates   73276..73920 (-) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain 2012AW-0353     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 68276..78920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY19_RS00335 pgsA 70838..71395 (-) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPY19_RS00340 uvrC 71442..73274 (-) 1833 WP_025818724.1 excinuclease ABC subunit UvrC -
  GPY19_RS00345 letA 73276..73920 (-) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GPY19_RS00350 - 74420..76783 (+) 2364 WP_031418998.1 DNA polymerase II -
  GPY19_RS00355 - 76780..77547 (-) 768 WP_025818726.1 nucleotidyltransferase domain-containing protein -
  GPY19_RS00360 yeiP 77734..78300 (+) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  GPY19_RS00365 - 78303..78623 (+) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=355157 GPY19_RS00345 WP_005386783.1 73276..73920(-) (letA) [Vibrio parahaemolyticus strain 2012AW-0353]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=355157 GPY19_RS00345 WP_005386783.1 73276..73920(-) (letA) [Vibrio parahaemolyticus strain 2012AW-0353]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTCGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5