Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GPY27_RS05010 Genome accession   NZ_CP046761
Coordinates   1021324..1021968 (+) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain AM46865     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016324..1026968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY27_RS04990 - 1016621..1016941 (-) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -
  GPY27_RS04995 yeiP 1016944..1017510 (-) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  GPY27_RS05000 - 1017697..1018464 (+) 768 WP_005465078.1 nucleotidyltransferase domain-containing protein -
  GPY27_RS05005 - 1018461..1020824 (-) 2364 WP_158113845.1 DNA polymerase II -
  GPY27_RS05010 letA 1021324..1021968 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GPY27_RS05015 uvrC 1021970..1023802 (+) 1833 WP_025500816.1 excinuclease ABC subunit UvrC Machinery gene
  GPY27_RS05020 pgsA 1023849..1024406 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=355104 GPY27_RS05010 WP_005386783.1 1021324..1021968(+) (letA) [Vibrio parahaemolyticus strain AM46865]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=355104 GPY27_RS05010 WP_005386783.1 1021324..1021968(+) (letA) [Vibrio parahaemolyticus strain AM46865]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCCCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTTGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5